Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   LK454_RS06590 Genome accession   NZ_CP085923
Coordinates   1353160..1353897 (+) Length   245 a.a.
NCBI ID   WP_001208410.1    Uniprot ID   -
Organism   Helicobacter pylori strain FDAARGOS_1601     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348160..1358897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK454_RS06565 (LK454_06565) panD 1350322..1350672 (+) 351 WP_000142228.1 aspartate 1-decarboxylase -
  LK454_RS06570 (LK454_06570) - 1350683..1350976 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  LK454_RS06575 (LK454_06575) - 1350976..1351971 (+) 996 WP_000468494.1 PDZ domain-containing protein -
  LK454_RS06580 (LK454_06580) comB6 1351979..1353034 (+) 1056 WP_000786653.1 P-type conjugative transfer protein TrbL Machinery gene
  LK454_RS06585 (LK454_06585) comB7 1353050..1353163 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  LK454_RS06590 (LK454_06590) comB8 1353160..1353897 (+) 738 WP_001208410.1 virB8 family protein Machinery gene
  LK454_RS06595 (LK454_06595) comB9 1353897..1354892 (+) 996 WP_001864273.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  LK454_RS06600 (LK454_06600) comB10 1354885..1356015 (+) 1131 WP_001045886.1 DNA type IV secretion system protein ComB10 Machinery gene
  LK454_RS06605 (LK454_06605) - 1356085..1357512 (+) 1428 WP_000694864.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  LK454_RS06610 (LK454_06610) gmd 1357512..1358657 (+) 1146 WP_000659812.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28468.66 Da        Isoelectric Point: 8.9830

>NTDB_id=539151 LK454_RS06590 WP_001208410.1 1353160..1353897(+) (comB8) [Helicobacter pylori strain FDAARGOS_1601]
MREKPFNSEQLVFLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQKADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=539151 LK454_RS06590 WP_001208410.1 1353160..1353897(+) (comB8) [Helicobacter pylori strain FDAARGOS_1601]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAATTAGTCTTTTTAGAAGAGCTTTTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ACAAGCTTTTAGGTTTGATGAGCTTTATCGCGCTTATCTTAGCGATCGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAAAGCGGATAAAAGCATTTCCAGCAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGTTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTTTTGAACGAAAACAAATTGGTGTATGAAAAGCGTTATAAAATCGCGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGTTTTAAAATCACCCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterProScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.971