Detailed information
Bioinformatically predicted
Overview
| Name | ccrB | Type | Machinery gene |
| Locus tag | JQN77_RS03220 | Genome accession | NZ_CP070306 |
| Coordinates | 663909..665537 (+) | Length | 542 a.a. |
| NCBI ID | WP_001836582.1 | Uniprot ID | - |
| Organism | Staphylococcus sp. SM9054 | ||
| Function | promote SCCmec transfer (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 632421..679424 | 663909..665537 | within | 0 |
| SCCmec | 657257..665536 | 663909..665537 | flank | -1627 |
Gene organization within MGE regions
Location: 632421..679424
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JQN77_RS03090 (JQN77_03090) | - | 632421..635573 (-) | 3153 | WP_001836569.1 | DEAD/DEAH box helicase | - |
| JQN77_RS03095 (JQN77_03095) | - | 635840..636442 (-) | 603 | WP_000908956.1 | hypothetical protein | - |
| JQN77_RS03100 (JQN77_03100) | - | 636650..636946 (-) | 297 | WP_000201644.1 | TfoX/Sxy family protein | - |
| JQN77_RS03105 (JQN77_03105) | - | 636995..637198 (-) | 204 | WP_000389759.1 | DUF6007 family protein | - |
| JQN77_RS03110 (JQN77_03110) | - | 637507..638493 (+) | 987 | WP_000662023.1 | tRNA-dihydrouridine synthase | - |
| JQN77_RS14160 | - | 638710..638891 (+) | 182 | Protein_603 | universal stress protein | - |
| JQN77_RS03115 (JQN77_03115) | sqr | 639159..640352 (-) | 1194 | WP_001033011.1 | type II sulfide:quinone oxidoreductase Sqr | - |
| JQN77_RS03120 (JQN77_03120) | cstB | 640371..641705 (-) | 1335 | WP_000465473.1 | persulfide dioxygenase-sulfurtransferase CstB | - |
| JQN77_RS03125 (JQN77_03125) | cstA | 641736..642803 (-) | 1068 | WP_001836572.1 | persulfide response sulfurtransferase CstA | - |
| JQN77_RS03130 (JQN77_03130) | cstR | 642940..643200 (+) | 261 | WP_001105089.1 | persulfide-sensing transcriptional repressor CstR | - |
| JQN77_RS03135 (JQN77_03135) | - | 643200..643955 (+) | 756 | WP_000355841.1 | sulfite exporter TauE/SafE family protein | - |
| JQN77_RS03140 (JQN77_03140) | - | 644053..644154 (+) | 102 | WP_001791873.1 | hypothetical protein | - |
| JQN77_RS03145 (JQN77_03145) | - | 644170..644622 (+) | 453 | Protein_610 | tRNA-dihydrouridine synthase | - |
| JQN77_RS03150 (JQN77_03150) | - | 644713..645216 (-) | 504 | WP_000575288.1 | hypothetical protein | - |
| JQN77_RS03155 (JQN77_03155) | - | 645209..645916 (-) | 708 | WP_000667076.1 | hypothetical protein | - |
| JQN77_RS03160 (JQN77_03160) | - | 646028..649156 (-) | 3129 | WP_001836570.1 | type I restriction endonuclease subunit R | - |
| JQN77_RS03165 (JQN77_03165) | - | 649140..650372 (-) | 1233 | WP_000394003.1 | restriction endonuclease subunit S | - |
| JQN77_RS03170 (JQN77_03170) | - | 650362..651876 (-) | 1515 | WP_000190898.1 | class I SAM-dependent DNA methyltransferase | - |
| JQN77_RS03175 (JQN77_03175) | - | 651915..652391 (-) | 477 | WP_001836567.1 | Pycsar system effector family protein | - |
| JQN77_RS03180 (JQN77_03180) | pycC | 652397..653668 (-) | 1272 | WP_000368660.1 | Pycsar phage resistance system cytidylate cyclase PycC | - |
| JQN77_RS03185 (JQN77_03185) | - | 653832..656045 (-) | 2214 | WP_205397782.1 | S8 family peptidase | - |
| JQN77_RS03190 (JQN77_03190) | - | 656038..657087 (-) | 1050 | WP_001836576.1 | ATP-binding protein | - |
| JQN77_RS03195 (JQN77_03195) | - | 657257..658771 (+) | 1515 | WP_001836559.1 | hypothetical protein | - |
| JQN77_RS03205 (JQN77_03205) | - | 660218..660511 (+) | 294 | WP_001836558.1 | single-stranded DNA-binding protein | - |
| JQN77_RS03210 (JQN77_03210) | - | 660511..662304 (+) | 1794 | WP_001836568.1 | DUF927 domain-containing protein | - |
| JQN77_RS03215 (JQN77_03215) | ccrA | 662538..663887 (+) | 1350 | WP_001836585.1 | recombinase family protein | Machinery gene |
| JQN77_RS03220 (JQN77_03220) | ccrB | 663909..665537 (+) | 1629 | WP_001836582.1 | recombinase family protein | Machinery gene |
| JQN77_RS03225 (JQN77_03225) | - | 666058..666408 (+) | 351 | WP_001836581.1 | SAUGI family uracil-DNA glycosylase inhibitor | - |
| JQN77_RS03230 (JQN77_03230) | - | 666495..666806 (+) | 312 | WP_001836584.1 | DUF960 family protein | - |
| JQN77_RS03235 (JQN77_03235) | - | 666821..667324 (+) | 504 | WP_002494302.1 | DUF1643 domain-containing protein | - |
| JQN77_RS03240 (JQN77_03240) | - | 667338..667559 (+) | 222 | WP_001836575.1 | hypothetical protein | - |
| JQN77_RS03245 (JQN77_03245) | - | 667722..668132 (+) | 411 | WP_001836564.1 | DUF2871 domain-containing protein | - |
| JQN77_RS03250 (JQN77_03250) | - | 668800..669297 (+) | 498 | WP_000776433.1 | GNAT family N-acetyltransferase | - |
| JQN77_RS03255 (JQN77_03255) | - | 669562..670236 (-) | 675 | WP_001105999.1 | IS6-like element IS257 family transposase | - |
| JQN77_RS03260 (JQN77_03260) | - | 670664..671113 (+) | 450 | WP_001836863.1 | hypothetical protein | - |
| JQN77_RS03265 (JQN77_03265) | - | 671561..672004 (-) | 444 | WP_001836860.1 | hypothetical protein | - |
| JQN77_RS03270 (JQN77_03270) | - | 672060..672473 (-) | 414 | WP_001836859.1 | universal stress protein | - |
| JQN77_RS03275 (JQN77_03275) | - | 672487..673938 (-) | 1452 | WP_001836864.1 | SulP family inorganic anion transporter | - |
| JQN77_RS03280 (JQN77_03280) | - | 674052..674594 (+) | 543 | WP_001836856.1 | recombinase family protein | - |
| JQN77_RS03285 (JQN77_03285) | - | 674608..674862 (+) | 255 | WP_001836853.1 | hypothetical protein | - |
| JQN77_RS03290 (JQN77_03290) | mobC | 675223..675612 (+) | 390 | WP_001836861.1 | plasmid mobilization relaxosome protein MobC | - |
| JQN77_RS03295 (JQN77_03295) | - | 675588..675785 (+) | 198 | WP_001836858.1 | hypothetical protein | - |
| JQN77_RS03300 (JQN77_03300) | - | 675772..676782 (+) | 1011 | WP_001836862.1 | relaxase/mobilization nuclease domain-containing protein | - |
| JQN77_RS03305 (JQN77_03305) | - | 676895..677290 (+) | 396 | WP_001836857.1 | hypothetical protein | - |
| JQN77_RS03310 (JQN77_03310) | - | 677915..678709 (+) | 795 | WP_047210380.1 | RepB family plasmid replication initiator protein | - |
| JQN77_RS03315 (JQN77_03315) | - | 678750..679424 (-) | 675 | WP_001105999.1 | IS6-like element IS257 family transposase | - |
Sequence
Protein
Download Length: 542 a.a. Molecular weight: 62622.75 Da Isoelectric Point: 9.9149
>NTDB_id=539132 JQN77_RS03220 WP_001836582.1 663909..665537(+) (ccrB) [Staphylococcus sp. SM9054]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVM
IYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVARVNQENKVDGAALHHDIAYKQQQYD
EVQTKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKSLFDAKQISKLLQHIFQDIKHMEKSRLK
ALYLSVIDRINIRKDDNHKKQFYVTLKLNNEVIKQVFNDTPLDEVHLSTSSLFLPQTLYLTI
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVM
IYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVARVNQENKVDGAALHHDIAYKQQQYD
EVQTKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKSLFDAKQISKLLQHIFQDIKHMEKSRLK
ALYLSVIDRINIRKDDNHKKQFYVTLKLNNEVIKQVFNDTPLDEVHLSTSSLFLPQTLYLTI
Nucleotide
Download Length: 1629 bp
>NTDB_id=539132 JQN77_RS03220 WP_001836582.1 663909..665537(+) (ccrB) [Staphylococcus sp. SM9054]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTTTCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGATGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAGGTCAAAGATATATACGCTGATCGTGGTA
TTTCAGGTAAATCTATGAACAGACCTGAGCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATAGATTGTGTTATG
ATCTACAAAACAAACCGATTAGCTCGTAATACATCGGATCTTCTGAAAATCGTCGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTTTATCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA
TATATTCGAGTCCTATGCCAAAGGACATGGCTATCGTAAAATAGCCAATGCATTAAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCTCAATGTGGCGCACCTATGGCAGCAAGCAATACAACGAATACACTTAAAGAT
GGGACCAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGCTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTCGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTTG
TAGCACGTGTTAATCAAGAAAATAAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAACCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGTCTT
TATTTGATGCCAAACAAATCAGTAAACTATTACAACACATCTTTCAAGATATTAAGCACATGGAAAAATCTCGACTCAAA
GCATTGTACCTATCAGTGATTGATCGTATTAATATTAGAAAAGATGACAATCATAAAAAACAGTTCTATGTCACACTCAA
ACTTAATAATGAAGTAATTAAACAGGTTTTCAATGATACTCCTCTCGACGAAGTGCATCTCAGCACTTCGTCTTTATTTT
TACCACAAACCCTATATCTTACTATTTAA
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTTTCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGATGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAGGTCAAAGATATATACGCTGATCGTGGTA
TTTCAGGTAAATCTATGAACAGACCTGAGCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATAGATTGTGTTATG
ATCTACAAAACAAACCGATTAGCTCGTAATACATCGGATCTTCTGAAAATCGTCGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTTTATCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA
TATATTCGAGTCCTATGCCAAAGGACATGGCTATCGTAAAATAGCCAATGCATTAAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCTCAATGTGGCGCACCTATGGCAGCAAGCAATACAACGAATACACTTAAAGAT
GGGACCAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGCTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTCGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTTG
TAGCACGTGTTAATCAAGAAAATAAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAACCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGTCTT
TATTTGATGCCAAACAAATCAGTAAACTATTACAACACATCTTTCAAGATATTAAGCACATGGAAAAATCTCGACTCAAA
GCATTGTACCTATCAGTGATTGATCGTATTAATATTAGAAAAGATGACAATCATAAAAAACAGTTCTATGTCACACTCAA
ACTTAATAATGAAGTAATTAAACAGGTTTTCAATGATACTCCTCTCGACGAAGTGCATCTCAGCACTTCGTCTTTATTTT
TACCACAAACCCTATATCTTACTATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ccrB | Staphylococcus aureus N315 |
96.494 |
100 |
0.965 |