Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JQN73_RS10200 Genome accession   NZ_CP070304
Coordinates   2383820..2385316 (-) Length   498 a.a.
NCBI ID   WP_205322909.1    Uniprot ID   -
Organism   Glaciimonas sp. PAMC28666     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2378820..2390316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN73_RS10180 (JQN73_10180) aroB 2379043..2380881 (+) 1839 WP_205322905.1 3-dehydroquinate synthase -
  JQN73_RS10185 (JQN73_10185) - 2380878..2382059 (+) 1182 WP_205322906.1 deoxyguanosinetriphosphate triphosphohydrolase -
  JQN73_RS10190 (JQN73_10190) - 2382403..2383101 (+) 699 WP_205322907.1 DUF4197 domain-containing protein -
  JQN73_RS10195 (JQN73_10195) hpf 2383336..2383689 (-) 354 WP_205322908.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JQN73_RS10200 (JQN73_10200) rpoN/rpoN1 2383820..2385316 (-) 1497 WP_205322909.1 RNA polymerase factor sigma-54 Machinery gene
  JQN73_RS10205 (JQN73_10205) lptB 2385334..2386086 (-) 753 WP_205322910.1 LPS export ABC transporter ATP-binding protein -
  JQN73_RS10210 (JQN73_10210) lptA 2386088..2386627 (-) 540 WP_205322911.1 lipopolysaccharide transport periplasmic protein LptA -
  JQN73_RS10215 (JQN73_10215) lptC 2386710..2387312 (-) 603 WP_205322912.1 LPS export ABC transporter periplasmic protein LptC -
  JQN73_RS10220 (JQN73_10220) - 2387320..2387886 (-) 567 WP_205322913.1 HAD family hydrolase -
  JQN73_RS10225 (JQN73_10225) - 2387886..2388917 (-) 1032 WP_205323303.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55505.79 Da        Isoelectric Point: 4.7822

>NTDB_id=539072 JQN73_RS10200 WP_205322909.1 2383820..2385316(-) (rpoN/rpoN1) [Glaciimonas sp. PAMC28666]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEHILSENPLLERLDDPLDNSVRLLADGAISTSASTMDAPPGDS
EVSSSPVEPEGGGEAPEAGENSQENSSNDSNDNEWSFDDVSRSGKAPDDEDSRPQLEACESTLREHLLQQMREAVDQQRD
RALIELIIDALDENGYLEEPLEDIFARLPEQLDIEIEELSMALKMVQSFDPTGVGARNASECLALQIKAFPKVAFVTRRL
ALTIVESYLTLFAQRDFNKIKKALECDDEDLREAQVVIRQCNPHPGATFSGGASDYVVPDVIVRKTKNGWQVMLNNDVMP
RLRVNALYANILKQGKSEGSLNSQLQEAKWLIKNMRQRFDTILRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHE
STISRVTTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIKQLIGAEDSKSPFSDSKIADMLAEQGMVVARRTV
AKYREALRIPPVSLRKSL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=539072 JQN73_RS10200 WP_205322909.1 2383820..2385316(-) (rpoN/rpoN1) [Glaciimonas sp. PAMC28666]
ATGAAACAATCTCTTCAACTCCGTACTTCGCAACATCTGGCGCTCACCCCTCAACTGCAGCAATCGATTCGTCTATTACA
GCTGTCTACGTTGGAGTTACATCAAGAACTGGAGCACATCCTTTCTGAAAACCCGCTGCTGGAGCGCCTCGACGATCCGT
TAGATAACTCGGTGCGACTGCTTGCCGACGGCGCTATCAGTACCAGCGCCTCAACGATGGATGCGCCCCCCGGCGACAGC
GAAGTGAGCAGTTCGCCAGTGGAGCCTGAGGGCGGCGGCGAAGCCCCTGAAGCTGGCGAAAACAGCCAGGAGAACAGCAG
CAACGATAGCAACGATAACGAATGGAGCTTTGACGACGTCTCCAGAAGCGGCAAAGCGCCCGACGATGAAGATTCACGCC
CGCAGCTGGAAGCCTGCGAATCAACGCTGCGCGAGCATTTGTTACAGCAGATGCGTGAGGCGGTCGATCAACAACGTGAT
CGTGCGCTGATCGAATTAATCATCGATGCGCTTGACGAAAATGGCTATCTGGAAGAGCCGCTGGAAGATATTTTCGCACG
CCTCCCGGAGCAACTTGATATTGAAATTGAAGAGTTGTCGATGGCTTTGAAAATGGTCCAGAGTTTCGACCCGACCGGCG
TTGGTGCCCGTAACGCCTCGGAATGCCTCGCATTACAAATCAAAGCTTTTCCCAAAGTGGCGTTCGTCACCCGCCGCCTG
GCGCTGACAATTGTTGAAAGCTATTTAACCTTATTCGCTCAGCGCGATTTCAATAAAATCAAAAAAGCGCTGGAGTGCGA
CGACGAGGATCTGCGCGAAGCACAGGTCGTTATCAGACAGTGTAATCCACACCCAGGTGCGACCTTTTCCGGCGGTGCTT
CAGATTATGTTGTGCCAGACGTCATTGTCAGAAAAACAAAGAATGGCTGGCAAGTCATGCTCAACAATGACGTTATGCCA
AGGCTGCGCGTAAATGCACTTTATGCCAACATTTTGAAGCAAGGAAAGAGTGAGGGCTCACTAAATTCGCAGCTGCAGGA
GGCGAAATGGTTGATCAAAAATATGCGTCAGCGCTTCGATACGATATTGCGTGTAGCCCAGGCAATTGTTGAGCGGCAGA
GGAATTTTTTCTCTCATGGCGCGGTCGCAATGCGACCTCTTGTGTTGCGCGAAATAGCTGATACACTAGGATTACACGAG
AGTACTATCTCACGTGTGACCACTCAGAAATACATGCTCACCCCTCACGGGATGTTCGAATTAAAGTATTTCTTTGGCAG
CCATGTTGCAACAGAGGCAGGTGGAGAGGCTTCCTCAACGGCGATACGGGCGTTAATCAAACAACTGATAGGAGCGGAAG
ATTCTAAAAGTCCTTTCTCTGACAGCAAGATTGCCGATATGCTCGCGGAACAAGGTATGGTAGTTGCACGCCGGACCGTC
GCAAAATATCGCGAAGCATTACGAATTCCGCCGGTTAGTTTACGTAAATCTTTATAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(138-328)

Sigma-54, DNA binding domain (Sigma54_DBD)

(341-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

57.708

100

0.586