Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   JK088_RS07145 Genome accession   NZ_CP085857
Coordinates   1575340..1576884 (-) Length   514 a.a.
NCBI ID   WP_017448524.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH214     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1570340..1581884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK088_RS07125 (JK088_07120) - 1570354..1571784 (-) 1431 WP_017448520.1 lipopolysaccharide biosynthesis protein -
  JK088_RS07130 (JK088_07125) - 1571777..1572949 (-) 1173 WP_140352255.1 glycosyltransferase family 4 protein -
  JK088_RS07135 (JK088_07130) - 1572960..1574144 (-) 1185 WP_017448522.1 glycosyltransferase -
  JK088_RS07140 (JK088_07135) - 1574295..1575365 (-) 1071 WP_017448523.1 glycosyltransferase family 4 protein -
  JK088_RS07145 (JK088_07140) luxO 1575340..1576884 (-) 1545 WP_017448524.1 sigma-54-dependent transcriptional regulator Regulator
  JK088_RS07150 (JK088_07145) - 1577156..1577536 (-) 381 WP_005454845.1 Hpt domain-containing protein -
  JK088_RS07155 (JK088_07150) - 1577549..1578235 (-) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  JK088_RS07160 (JK088_07155) - 1578235..1580301 (-) 2067 WP_236556151.1 SLBB domain-containing protein -
  JK088_RS07165 (JK088_07160) - 1580334..1581236 (-) 903 WP_017448526.1 OmpA family protein -
  JK088_RS07170 (JK088_07165) - 1581263..1581583 (-) 321 WP_005454817.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57466.31 Da        Isoelectric Point: 6.0370

>NTDB_id=539071 JK088_RS07145 WP_017448524.1 1575340..1576884(-) (luxO) [Vibrio parahaemolyticus strain LH214]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNHLNGHNAPAMQTQPIEPVQPVQEAPAQHTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=539071 JK088_RS07145 WP_017448524.1 1575340..1576884(-) (luxO) [Vibrio parahaemolyticus strain LH214]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCGGCAACATTGGCCCACGGTGGGACGCTATTTCTG
GACGAGCTATGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTTCGCGAAGACTTGTATTACCGTGTTCACGTTGTTCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATT
GTCACGTTAGCCAAGCATTTTCTCACAACTTACGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATTAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCCCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACCATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGCGCCTGCGCAACACACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTGTCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.098

97.082

0.477