Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   JQN73_RS07940 Genome accession   NZ_CP070304
Coordinates   1862173..1862718 (+) Length   181 a.a.
NCBI ID   WP_205322538.1    Uniprot ID   -
Organism   Glaciimonas sp. PAMC28666     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1857173..1867718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN73_RS07930 (JQN73_07930) - 1857927..1858574 (-) 648 WP_240162472.1 DNA-3-methyladenine glycosylase I -
  JQN73_RS07935 (JQN73_07935) - 1858969..1861728 (+) 2760 WP_205322537.1 sulfite reductase flavoprotein subunit alpha -
  JQN73_RS07940 (JQN73_07940) fimT 1862173..1862718 (+) 546 WP_205322538.1 GspH/FimT family pseudopilin Machinery gene
  JQN73_RS07945 (JQN73_07945) pilV 1862771..1863313 (+) 543 WP_205322539.1 type IV pilus modification protein PilV -
  JQN73_RS07950 (JQN73_07950) - 1863322..1864455 (+) 1134 WP_240162473.1 PilW family protein -
  JQN73_RS07955 (JQN73_07955) - 1864452..1865027 (+) 576 WP_205322541.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18538.41 Da        Isoelectric Point: 9.3269

>NTDB_id=539070 JQN73_RS07940 WP_205322538.1 1862173..1862718(+) (fimT) [Glaciimonas sp. PAMC28666]
MIKRHSFAAFTLVELLITIAVAAILVSLAVPSFNTMLLNNRLTGQANAFMSALNYARAGALTQNVNVQVCPVGATGSVTC
GANWSAGWIVTTVPAAGVGTLLQSYKAGPNDPLLSAVAFAGVTATTINFDPRGLATTQSNFKICDNRGAAYARSLQVVVT
GSVQQGPTPGVAVWGGALVCP

Nucleotide


Download         Length: 546 bp        

>NTDB_id=539070 JQN73_RS07940 WP_205322538.1 1862173..1862718(+) (fimT) [Glaciimonas sp. PAMC28666]
ATGATCAAGCGCCATTCCTTCGCTGCGTTCACCCTGGTCGAATTGTTGATCACGATTGCGGTCGCCGCGATATTGGTCTC
TCTGGCTGTGCCCTCATTCAATACGATGCTTCTCAATAACCGGCTGACGGGGCAAGCGAATGCGTTTATGAGCGCGCTTA
ACTATGCTCGCGCTGGCGCGTTGACGCAAAATGTTAACGTCCAGGTTTGTCCAGTCGGTGCGACCGGATCCGTCACCTGC
GGTGCCAACTGGAGTGCTGGCTGGATTGTCACCACAGTGCCTGCTGCGGGCGTCGGCACCCTCTTACAAAGTTATAAGGC
AGGCCCCAACGATCCGTTGTTATCGGCGGTTGCTTTTGCCGGGGTTACGGCAACCACGATCAACTTCGATCCTCGGGGCC
TGGCCACCACCCAATCCAATTTTAAGATTTGCGATAACCGTGGCGCGGCTTATGCACGCTCACTACAGGTGGTGGTCACA
GGATCGGTTCAACAGGGGCCGACGCCGGGCGTGGCGGTGTGGGGTGGCGCGTTAGTTTGTCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)

Type II transport protein GspH (GspH)

(45-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

55.932

97.79

0.547