Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JQN73_RS00725 Genome accession   NZ_CP070304
Coordinates   178946..180319 (-) Length   457 a.a.
NCBI ID   WP_205321208.1    Uniprot ID   -
Organism   Glaciimonas sp. PAMC28666     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 173946..185319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN73_RS00710 (JQN73_00710) epsE 175109..175909 (-) 801 WP_205321205.1 polysaccharide export protein EpsE -
  JQN73_RS00715 (JQN73_00715) - 176009..176962 (-) 954 WP_205321206.1 EpsD family peptidyl-prolyl cis-trans isomerase -
  JQN73_RS00720 (JQN73_00720) epsL 177041..178321 (-) 1281 WP_205321207.1 XrtB/PEP-CTERM-associated polysaccharide biosynthesis outer membrane protein EpsL -
  JQN73_RS00725 (JQN73_00725) radA 178946..180319 (-) 1374 WP_205321208.1 DNA repair protein RadA Machinery gene
  JQN73_RS00730 (JQN73_00730) alr 180531..181619 (-) 1089 WP_205321209.1 alanine racemase -
  JQN73_RS00735 (JQN73_00735) lplT 181912..183174 (+) 1263 WP_205321210.1 lysophospholipid transporter LplT -
  JQN73_RS00740 (JQN73_00740) - 183228..184295 (-) 1068 WP_205321211.1 DUF1853 family protein -
  JQN73_RS00745 (JQN73_00745) - 184276..185301 (-) 1026 WP_205321212.1 uracil-DNA glycosylase family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48468.02 Da        Isoelectric Point: 8.0025

>NTDB_id=539060 JQN73_RS00725 WP_205321208.1 178946..180319(-) (radA) [Glaciimonas sp. PAMC28666]
MAKAKTNYTCTECGGIANKWTGQCPACGQWNTLVETIIESVGNRFSNQHKGLAQTAPVVSLSDIDAIDVPRFGTGIEEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSRVKKVLYVSGEESGAQIAMRGKRLAVDAKDLKLQAEIQLEKILNT
LVEHKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRVAKQTGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAVKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDIAVAGSCVMVTQEGTRPLLVEIQALVDASHAPN
ARRLSVGLDQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGE
IRPAPRGQERLREAAKLGFSIAVIPKSNVPKQKIEGLTVIGVERIDDALNKIRDAGE

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=539060 JQN73_RS00725 WP_205321208.1 178946..180319(-) (radA) [Glaciimonas sp. PAMC28666]
ATGGCCAAAGCAAAAACCAATTACACCTGCACCGAATGCGGCGGCATTGCCAATAAATGGACCGGGCAATGTCCGGCCTG
CGGTCAATGGAACACATTGGTGGAGACGATCATTGAATCGGTCGGCAATCGCTTTTCGAATCAACACAAAGGCTTGGCGC
AGACGGCACCGGTAGTCAGCTTGTCAGATATCGATGCCATTGATGTGCCGCGCTTTGGCACCGGGATCGAAGAATTCGAT
CGGGTGCTTGGCGGTGGGCTGGTGGCTGGAGGCGTTGTATTGATTGGCGGAGATCCCGGTATCGGTAAATCCACGCTGCT
ATTACAGGCGCTGGCAAATCTCTCGCGTGTAAAAAAAGTCTTGTACGTCAGCGGTGAGGAGTCCGGTGCGCAAATTGCCA
TGCGTGGCAAACGACTGGCGGTGGATGCCAAAGATCTAAAATTGCAGGCGGAAATCCAGCTTGAAAAGATTTTGAACACC
TTGGTGGAGCATAAGCCGGAAGTGGTGGTGATTGACTCGATTCAAACGGTTTATTCCGACGCGCTTTCTTCCGCGCCCGG
TTCAGTGGCACAAGTGCGTGAATGCGCAGCCCAATTAACCCGTGTTGCAAAGCAGACCGGTATCACCATTATCATGGTCG
GCCATGTAACGAAAGAGGGGGCGTTAGCCGGACCTCGGGTTTTAGAGCATATTGTCGATACGGTTCTGTATTTTGAAGGT
GATACACATTCGAGTTTTCGCCTGGTGCGCGCCGTCAAGAATCGATTTGGCGCAGTCAATGAGCTAGGTGTTTTTGCGAT
GACCGAAAAAGGCTTGAAGGGCGTGTCCAATCCCTCAGCGTTATTTCTGTCGCAGCATGATATCGCCGTGGCTGGTTCTT
GCGTGATGGTGACTCAGGAAGGAACGCGTCCCTTGCTGGTTGAAATTCAAGCATTGGTCGATGCGTCGCATGCGCCAAAT
GCGCGTCGTCTTTCTGTCGGGCTGGACCAAAACCGTCTCGCCATGTTGCTGGCGGTGTTGCATCGCCATGCGGGGATCGC
CGCATTCGATCAGGACGTTTTTATCAACGCAGTCGGCGGGGTAAAAATTACTGAGCCGGCAGCCGATCTTGCGGTATTGC
TCGCGATCAATTCATCGATGCGAAACAAGCCGCTACCGCGTGGTTTGGTTGTGTTCGGCGAAGTCGGACTTGCTGGTGAA
ATTCGACCCGCGCCCCGTGGCCAGGAGCGCTTGCGAGAGGCAGCCAAGTTGGGATTTTCTATTGCCGTCATTCCAAAATC
GAACGTACCTAAACAAAAAATTGAAGGCTTAACAGTGATTGGCGTGGAACGGATTGATGACGCACTCAATAAAATCCGCG
ATGCCGGGGAGTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-451)

AAA domain (AAA_25)

(73-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.67

99.562

0.495
  radA Streptococcus mitis NCTC 12261

47.807

99.781

0.477
  radA Streptococcus mitis SK321

47.807

99.781

0.477
  radA Streptococcus pneumoniae TIGR4

47.702

100

0.477
  radA Streptococcus pneumoniae D39

47.702

100

0.477
  radA Streptococcus pneumoniae Rx1

47.702

100

0.477
  radA Streptococcus pneumoniae R6

47.702

100

0.477