Detailed information NTG0539008

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: LJ838_RS17440
• Genome accession: NZ_CP085842
• Coordinates: 3564353..3565336 (-)
• Length: 327 a.a.
• NCBI ID: WP_001196486.1
• Uniprot ID: A7ZT85
• Organism: Escherichia coli strain B95. delta A
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 3559353..3570336

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJ838_RS17415 (LJ838_17415)	ldrD	3560502..3560609 (-)	108	WP_000141634.1	type I toxin-antitoxin system toxic polypeptide LdrD	-
LJ838_RS17420 (LJ838_17420)	-	3560985..3561092 (-)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
LJ838_RS17425 (LJ838_17425)	-	3561468..3561575 (-)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
LJ838_RS17430 (LJ838_17430)	yhjV	3562051..3563322 (+)	1272	WP_001295225.1	aromatic amino acid transport family protein	-
LJ838_RS17435 (LJ838_17435)	dppF	3563352..3564356 (-)	1005	WP_000107012.1	dipeptide ABC transporter ATP-binding subunit DppF	-
LJ838_RS17440 (LJ838_17440)	amiE	3564353..3565336 (-)	984	WP_001196486.1	dipeptide ABC transporter ATP-binding protein	Regulator
LJ838_RS17445 (LJ838_17445)	dppC	3565347..3566249 (-)	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
LJ838_RS17450 (LJ838_17450)	dppB	3566259..3567278 (-)	1020	WP_000938855.1	dipeptide ABC transporter permease DppB	-
LJ838_RS17455 (LJ838_17455)	dppA	3567586..3569193 (-)	1608	WP_001222883.1	dipeptide ABC transporter substrate-binding protein DppA	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35844.36 Da
• Isoelectric Point: 6.5814

>NTDB_id=539008 LJ838_RS17440 WP_001196486.1 3564353..3565336(-) (amiE) [Escherichia coli strain B95. delta A]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide

• Length: 984 bp

>NTDB_id=539008 LJ838_RS17440 WP_001196486.1 3564353..3565336(-) (amiE) [Escherichia coli strain B95. delta A]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-297)

• ABC transporter (ABC_tran) (24-181)

3D structure

• AlphaFold DB: A7ZT85

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus salivarius strain HSISS4	43.302	98.165	0.425
amiE	Streptococcus thermophilus LMG 18311	42.991	98.165	0.422
amiE	Streptococcus thermophilus LMD-9	42.991	98.165	0.422
oppD	Streptococcus mutans UA159	41.379	97.554	0.404