Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LJ838_RS09945 Genome accession   NZ_CP085842
Coordinates   1978342..1979769 (+) Length   475 a.a.
NCBI ID   WP_000980563.1    Uniprot ID   -
Organism   Escherichia coli strain B95. delta A     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1973342..1984769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ838_RS09910 (LJ838_09910) - 1973754..1973846 (+) 93 Protein_1944 DUF957 domain-containing protein -
  LJ838_RS09915 (LJ838_09915) - 1974135..1974272 (-) 138 Protein_1945 transposase domain-containing protein -
  LJ838_RS09920 (LJ838_09920) - 1974335..1974517 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  LJ838_RS09925 (LJ838_09925) tmaR 1974618..1974947 (-) 330 WP_000450409.1 DUF496 family protein -
  LJ838_RS09930 (LJ838_09930) yeeA 1975119..1976177 (-) 1059 WP_001200905.1 FUSC family protein -
  LJ838_RS09935 (LJ838_09935) sbmC 1976375..1976848 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  LJ838_RS09940 (LJ838_09940) dacD 1976967..1978133 (-) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LJ838_RS09945 (LJ838_09945) sbcB 1978342..1979769 (+) 1428 WP_000980563.1 exodeoxyribonuclease I Machinery gene
  LJ838_RS09950 (LJ838_09950) tsuB 1979812..1980039 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LJ838_RS09955 (LJ838_09955) tsuA 1980053..1981111 (-) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  LJ838_RS09960 (LJ838_09960) plaP 1981290..1982648 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LJ838_RS09965 (LJ838_09965) yoeI 1982638..1982700 (-) 63 WP_010723108.1 membrane protein YoeI -
  LJ838_RS09970 (LJ838_09970) yeeY 1982915..1983844 (-) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  LJ838_RS09975 (LJ838_09975) yeeZ 1983890..1984714 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6054

>NTDB_id=538976 LJ838_RS09945 WP_000980563.1 1978342..1979769(+) (sbcB) [Escherichia coli strain B95. delta A]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=538976 LJ838_RS09945 WP_000980563.1 1978342..1979769(+) (sbcB) [Escherichia coli strain B95. delta A]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581