Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   STRIC_RS09865 Genome accession   NZ_AEUX02000007
Coordinates   412935..413729 (+) Length   264 a.a.
NCBI ID   WP_008090137.1    Uniprot ID   G5K5C5
Organism   Streptococcus ictaluri 707-05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 407935..418729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRIC_RS09855 (STRIC_2038) pcsB 410359..411609 (+) 1251 WP_008090374.1 peptidoglycan hydrolase PcsB -
  STRIC_RS09860 (STRIC_2039) - 411771..412733 (+) 963 WP_008090013.1 ribose-phosphate diphosphokinase -
  STRIC_RS09865 (STRIC_2040) recO 412935..413729 (+) 795 WP_008090137.1 DNA repair protein RecO Machinery gene
  STRIC_RS09870 (STRIC_2041) plsX 413795..414808 (+) 1014 WP_008089775.1 phosphate acyltransferase PlsX -
  STRIC_RS09875 (STRIC_2042) - 414795..415043 (+) 249 WP_008089928.1 phosphopantetheine-binding protein -
  STRIC_RS09880 (STRIC_2043) purC 415191..415898 (+) 708 WP_008089619.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31164.70 Da        Isoelectric Point: 6.5017

>NTDB_id=53896 STRIC_RS09865 WP_008090137.1 412935..413729(+) (recO) [Streptococcus ictaluri 707-05]
MQTKESFGIVLYNKNYREDDKLVKLFTEVAGKRMFFVKQISRSKLASVVQPLRAAEFILKLSDTGLSYIEDYSQAETYRH
INEDIFRLAYATYLLALVDVAIADNEPDPHLFAFLKKTLDLMEEGLDYEILTNIFEIQLLERFGVQLNFHNCVFCHRAGL
PFDFSHRYSGVLCPQHYHEDERRYHLDPNVLYLLDRFQNLDFDDLKRISLKPEMKQKLRQFIDAIYDDYVGIRLKSKKFI
DELESWGNIMKKSDKSKETSRDGK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=53896 STRIC_RS09865 WP_008090137.1 412935..413729(+) (recO) [Streptococcus ictaluri 707-05]
ATGCAAACGAAAGAATCATTTGGTATTGTACTATATAATAAAAATTACCGTGAAGATGATAAATTAGTTAAACTATTTAC
AGAAGTTGCTGGTAAACGGATGTTTTTTGTCAAGCAGATTAGTCGTTCTAAATTAGCATCTGTTGTTCAACCCTTGAGGG
CGGCAGAATTCATTCTTAAGCTGAGCGATACAGGTCTTTCCTATATTGAAGATTATAGTCAGGCAGAGACTTATCGTCAT
ATCAATGAAGACATTTTTCGATTGGCTTATGCAACTTATCTTTTAGCACTTGTGGATGTCGCTATTGCTGATAACGAACC
AGATCCTCATTTATTTGCTTTTTTAAAAAAGACACTTGATTTAATGGAAGAAGGCTTAGATTATGAAATCTTAACTAATA
TTTTTGAAATTCAACTTTTAGAGCGTTTTGGAGTCCAGTTAAACTTTCATAATTGTGTTTTTTGTCATCGGGCAGGTCTT
CCTTTTGATTTTTCTCATCGCTATTCAGGTGTTCTTTGTCCACAACATTATCATGAAGATGAGCGTCGCTATCATTTAGA
TCCCAATGTTCTTTATCTTTTGGATCGTTTTCAAAATTTAGATTTTGATGACTTGAAACGCATTTCCTTAAAACCAGAAA
TGAAACAAAAACTTCGTCAGTTTATTGATGCTATTTATGATGATTATGTTGGTATAAGACTGAAAAGTAAAAAATTTATT
GATGAACTAGAATCTTGGGGAAATATTATGAAAAAATCAGATAAATCAAAGGAGACTAGTCGAGATGGGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K5C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.961

96.591

0.598

Multiple sequence alignment