Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NLHDIDDJ_RS17695 Genome accession   NZ_CP085788
Coordinates   3692016..3692516 (-) Length   166 a.a.
NCBI ID   WP_031380015.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RCH52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3687016..3697516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLHDIDDJ_RS17685 (NLHDIDDJ_03514) - 3690198..3690980 (-) 783 WP_114159403.1 pilus assembly PilX N-terminal domain-containing protein -
  NLHDIDDJ_RS17690 (NLHDIDDJ_03515) pilW 3690977..3692014 (-) 1038 WP_114159401.1 PilW family protein Machinery gene
  NLHDIDDJ_RS17695 (NLHDIDDJ_03516) pilV 3692016..3692516 (-) 501 WP_031380015.1 type IV pilus modification protein PilV Machinery gene
  NLHDIDDJ_RS17700 (NLHDIDDJ_03517) fimU 3692513..3692962 (-) 450 WP_004745398.1 GspH/FimT family pseudopilin Machinery gene
  NLHDIDDJ_RS17705 - 3692868..3693119 (+) 252 Protein_3459 hypothetical protein -
  NLHDIDDJ_RS17710 (NLHDIDDJ_03518) ispH 3693132..3694082 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NLHDIDDJ_RS17715 (NLHDIDDJ_03519) gmk 3694205..3694834 (+) 630 WP_000015937.1 guanylate kinase -
  NLHDIDDJ_RS17720 (NLHDIDDJ_03520) rpoZ 3694907..3695185 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NLHDIDDJ_RS17725 - 3695224..3695354 (+) 131 Protein_3463 hypothetical protein -
  NLHDIDDJ_RS17730 (NLHDIDDJ_03521) - 3695394..3697499 (+) 2106 WP_001117589.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18270.82 Da        Isoelectric Point: 4.8719

>NTDB_id=538941 NLHDIDDJ_RS17695 WP_031380015.1 3692016..3692516(-) (pilV) [Acinetobacter baumannii strain RCH52]
MKKIAHQRGMGMIEILVALLILAIGVLGFIALQYRALEASAESTSRVQAITIARDIAERIRVNRNSLAVYNQQLQDPIKQ
KDFVKDCFQDNCSDTDLADFDVAQVVKNASSLGMTMNMIACPQTKNRQCVYIAWGDTSATNGTSAGDCTQDTSYNDNSTC
VIMETY

Nucleotide


Download         Length: 501 bp        

>NTDB_id=538941 NLHDIDDJ_RS17695 WP_031380015.1 3692016..3692516(-) (pilV) [Acinetobacter baumannii strain RCH52]
ATGAAGAAGATTGCACACCAACGTGGTATGGGAATGATCGAAATTTTAGTTGCTTTGCTGATTTTAGCAATTGGAGTTTT
AGGGTTTATTGCTTTGCAATATAGGGCTTTAGAGGCAAGTGCAGAAAGCACTTCACGCGTACAAGCAATTACGATAGCAC
GTGATATAGCTGAGCGGATTAGAGTTAACCGTAATTCATTAGCTGTGTATAACCAACAACTTCAAGATCCTATTAAACAG
AAAGACTTTGTCAAAGATTGCTTCCAAGACAATTGTAGTGACACAGATTTAGCAGATTTCGATGTTGCACAAGTTGTGAA
AAATGCGTCTTCCTTGGGCATGACTATGAATATGATTGCTTGCCCACAAACTAAAAATCGACAATGTGTTTATATTGCAT
GGGGTGATACTAGTGCAACGAATGGCACCAGTGCAGGGGATTGTACTCAAGATACTTCATATAACGATAATTCAACGTGT
GTGATTATGGAGACCTATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

40.659

100

0.446
  pilV Acinetobacter baumannii D1279779

39.665

100

0.428