Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   NLHDIDDJ_RS16280 Genome accession   NZ_CP085788
Coordinates   3412001..3412516 (+) Length   171 a.a.
NCBI ID   WP_109291133.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RCH52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3407001..3417516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLHDIDDJ_RS16260 (NLHDIDDJ_03229) - 3407320..3408780 (+) 1461 WP_000004971.1 amino acid permease -
  NLHDIDDJ_RS16265 (NLHDIDDJ_03230) - 3409057..3410262 (+) 1206 WP_228413373.1 RtcB family protein -
  NLHDIDDJ_RS16270 (NLHDIDDJ_03231) - 3410281..3410424 (+) 144 WP_162138624.1 hypothetical protein -
  NLHDIDDJ_RS16275 (NLHDIDDJ_03232) omp38 3410549..3411619 (-) 1071 WP_000777878.1 outer membrane protein Omp38 -
  NLHDIDDJ_RS16280 (NLHDIDDJ_03233) fimT 3412001..3412516 (+) 516 WP_109291133.1 GspH/FimT family pseudopilin Machinery gene
  NLHDIDDJ_RS16285 (NLHDIDDJ_03234) - 3412625..3413800 (+) 1176 WP_031379844.1 thiolase family protein -
  NLHDIDDJ_RS16290 (NLHDIDDJ_03235) - 3413927..3414370 (+) 444 WP_005130885.1 VOC family protein -
  NLHDIDDJ_RS16295 (NLHDIDDJ_03236) - 3414413..3414766 (-) 354 WP_000457787.1 DMT family transporter -
  NLHDIDDJ_RS16300 (NLHDIDDJ_03237) - 3414849..3415334 (-) 486 WP_228413374.1 DUF934 domain-containing protein -
  NLHDIDDJ_RS16305 (NLHDIDDJ_03238) - 3415327..3416970 (-) 1644 WP_000281764.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19663.91 Da        Isoelectric Point: 8.8196

>NTDB_id=538933 NLHDIDDJ_RS16280 WP_109291133.1 3412001..3412516(+) (fimT) [Acinetobacter baumannii strain RCH52]
MFKSPGFTIVELTITLVILVIMSVITIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=538933 NLHDIDDJ_RS16280 WP_109291133.1 3412001..3412516(+) (fimT) [Acinetobacter baumannii strain RCH52]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAACCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGCCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACTTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427