Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C380_RS01460 Genome accession   NC_018708
Coordinates   327762..329141 (+) Length   459 a.a.
NCBI ID   WP_015012120.1    Uniprot ID   A0A8I1V8J8
Organism   Acidovorax sp. KKS102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 322762..334141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C380_RS01440 (C380_01475) - 323447..325027 (+) 1581 WP_043565049.1 ABC transporter substrate-binding protein -
  C380_RS01445 (C380_01480) - 325105..325728 (-) 624 WP_015012117.1 glutathione S-transferase family protein -
  C380_RS01450 (C380_01485) - 325805..326782 (-) 978 WP_015012118.1 2-dehydropantoate 2-reductase -
  C380_RS01455 (C380_01490) hpaI 326817..327647 (-) 831 WP_015012119.1 4-hydroxy-2-oxoheptanedioate aldolase -
  C380_RS01460 (C380_01495) radA 327762..329141 (+) 1380 WP_015012120.1 DNA repair protein RadA Machinery gene
  C380_RS01465 (C380_01500) - 329200..329619 (+) 420 WP_015012121.1 hypothetical protein -
  C380_RS01470 (C380_01505) - 329734..330672 (+) 939 WP_015012122.1 branched-chain amino acid transaminase -
  C380_RS01475 (C380_01510) - 330678..330884 (+) 207 WP_015012123.1 zinc-finger domain-containing protein -
  C380_RS01480 (C380_01515) - 330900..331715 (+) 816 WP_015012124.1 glycosyltransferase family 2 protein -
  C380_RS01485 (C380_01520) - 331712..332998 (+) 1287 WP_015012125.1 O-antigen ligase -
  C380_RS01490 (C380_01525) - 333011..333985 (+) 975 WP_015012126.1 glycosyltransferase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48036.50 Da        Isoelectric Point: 6.8926

>NTDB_id=53888 C380_RS01460 WP_015012120.1 327762..329141(+) (radA) [Acidovorax sp. KKS102]
MAKEKTTFTCTECGGTSPRWLGKCPSCGAWNTLIEQVAEAGPGKNRLSAPQGYAGLANAQPVLPLAAIEAQDVARTPSGI
DELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALQRAGLPTLYVTGEESGAQVALRSRRLGIEGSQVQLLAEIQLE
KILATVDATQPAVVVIDSIQTTYSDQLTSAPGSVAQVRECAAHLTRMAKGTGIAVILVGHVTKEGALAGPRVLEHMVDTV
LYFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHSEPVPGSCVMVTLEGTRPLLVEIQALVDS
GGPSPRRLSVGLDKDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLSITSSLRGKALPRGFLAFGEVG
LAGEVRPAPRGQERLKEAAKLGFSVAVVPKANAPKKPIEGLTIHAVERVEEAMDVVRGL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=53888 C380_RS01460 WP_015012120.1 327762..329141(+) (radA) [Acidovorax sp. KKS102]
ATGGCCAAAGAAAAAACCACGTTCACCTGTACCGAATGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGTCCTG
CGGCGCCTGGAACACGCTGATCGAGCAGGTGGCCGAGGCCGGGCCGGGCAAGAACCGCCTGAGTGCGCCGCAAGGCTACG
CGGGCCTGGCCAACGCGCAACCCGTGCTGCCGCTGGCGGCCATTGAGGCCCAGGACGTGGCCCGCACCCCCAGCGGCATC
GACGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTGGAGGGCGGCGTGGTGCTGATTGGCGGCGACCCGGGCATTGGCAA
ATCCACCCTGCTGCTGCAGGCCATGGACGCGCTGCAGCGCGCGGGCTTGCCCACGCTGTACGTGACGGGCGAGGAAAGCG
GCGCGCAGGTGGCGCTTCGCTCACGCCGCCTGGGCATCGAGGGCAGTCAGGTGCAGTTGCTGGCCGAGATCCAGCTCGAA
AAAATATTGGCCACGGTGGACGCCACGCAACCGGCCGTGGTCGTCATCGACTCCATCCAGACCACCTATTCCGACCAGCT
CACCAGCGCACCGGGTTCGGTCGCCCAGGTGCGCGAATGCGCAGCGCACCTCACGCGCATGGCCAAGGGCACGGGCATCG
CCGTGATTCTGGTGGGCCATGTGACCAAAGAGGGCGCTCTGGCCGGGCCGCGCGTGCTGGAGCACATGGTGGACACGGTG
CTGTACTTCGAAGGCGATACCCACAGCCAGTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTCAACGAGAT
TGGCGTGTTCGCCATGACCGAAAAGGGCCTCAAGGGCGTGAGCAACCCCAGCGCCATCTTCTTGAGTCAGCACTCCGAGC
CCGTGCCCGGCAGCTGCGTGATGGTGACGCTGGAGGGCACACGCCCCCTGCTGGTCGAGATCCAGGCCCTGGTGGACAGC
GGCGGCCCCAGCCCCCGGCGCCTGAGTGTGGGCCTGGACAAGGACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCA
CGCGGGCGTGGCGTGCATGGACCAGGACGTGTTTGTGAACGCGGTGGGCGGTGTGCGCATCAGCGAGCCTGCGGCCGATT
TGGCGGTGATGTTGTCCATCACGTCCAGCCTGCGCGGCAAGGCGCTGCCCCGGGGCTTCCTGGCGTTTGGTGAGGTAGGC
CTGGCGGGCGAGGTGCGGCCTGCGCCCCGGGGGCAGGAGCGATTGAAGGAGGCTGCCAAGCTGGGCTTCAGCGTGGCCGT
GGTGCCCAAGGCCAACGCGCCCAAAAAGCCCATCGAGGGCCTGACCATCCACGCTGTGGAGCGTGTGGAGGAGGCCATGG
ACGTGGTCCGCGGCTTGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

99.346

0.481
  radA Streptococcus mitis NCTC 12261

46.476

98.911

0.46
  radA Streptococcus pneumoniae Rx1

48.26

93.9

0.453
  radA Streptococcus pneumoniae D39

48.26

93.9

0.453
  radA Streptococcus pneumoniae R6

48.26

93.9

0.453
  radA Streptococcus pneumoniae TIGR4

48.26

93.9

0.453
  radA Streptococcus mitis SK321

48.26

93.9

0.453

Multiple sequence alignment