Detailed information NTG0538862

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PCC6301pg_RS10685
• Genome accession: NZ_CP085785
• Coordinates: 2144594..2145826 (-)
• Length: 410 a.a.
• NCBI ID: WP_011378299.1
• Uniprot ID: Q31LH0
• Organism: Synechococcus elongatus PCC 6301
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2139594..2150826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCC6301pg_RS10660 (PCC6301pg_2144)	pheS	2140288..2141289 (+)	1002	WP_011244339.1	phenylalanine--tRNA ligase subunit alpha	-
PCC6301pg_RS10665 (PCC6301pg_2145)	-	2141413..2141667 (-)	255	WP_011378297.1	helix-hairpin-helix domain-containing protein	-
PCC6301pg_RS10670 (PCC6301pg_2146)	dusA	2141764..2142795 (-)	1032	WP_011244337.1	tRNA dihydrouridine(20/20a) synthase DusA	-
PCC6301pg_RS10675 (PCC6301pg_2147)	-	2142822..2144069 (+)	1248	WP_011378298.1	NAD(P)/FAD-dependent oxidoreductase	-
PCC6301pg_RS10680 (PCC6301pg_2148)	-	2144034..2144588 (-)	555	WP_011244335.1	hypothetical protein	-
PCC6301pg_RS10685 (PCC6301pg_2149)	pilC	2144594..2145826 (-)	1233	WP_011378299.1	type II secretion system F family protein	Machinery gene
PCC6301pg_RS10690 (PCC6301pg_2150)	pilT	2145851..2146939 (-)	1089	WP_011378300.1	type IV pilus twitching motility protein PilT	Machinery gene
PCC6301pg_RS10695 (PCC6301pg_2151)	pilB/pilB1	2147010..2149010 (-)	2001	WP_011378301.1	GspE/PulE family protein	Machinery gene
PCC6301pg_RS10700 (PCC6301pg_2152)	grpE	2149287..2149910 (+)	624	WP_011378302.1	nucleotide exchange factor GrpE	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45123.05 Da
• Isoelectric Point: 9.1701

>NTDB_id=538862 PCC6301pg_RS10685 WP_011378299.1 2144594..2145826(-) (pilC) [Synechococcus elongatus PCC 6301]
MPTYVAQVRDSRGALRKQRIQAGNVREARVGLRQQGFLVQSIDESAGLSLGGLSSFNLEEATSKVTVKDMALFSRQLSSL
VDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLNLSDSMRKFPKVFDGLYVAMIQAGETGGVLDDVLNRLSKLLE
DMSRLRNQMKSAMTYPMAVFVIAILVFLGMTIFIIPTFAGIFEDQGAELPGFTLLLLSISQLLRTPIFWGFFLIFLFGSI
FVFKQYYSTPPGRLSVDNLVLRLPVLGEMIQKAATARFCRTFGSLTRAGVPIMTALEIVRDTAGNQAIARSIDAARMEVQ
TGGMMSVALSRYRVFPLMALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGSILLAMYLP
MFSIFDQIKG

Nucleotide

• Length: 1233 bp

>NTDB_id=538862 PCC6301pg_RS10685 WP_011378299.1 2144594..2145826(-) (pilC) [Synechococcus elongatus PCC 6301]
ATGCCGACATATGTTGCTCAGGTTCGTGATAGCCGAGGAGCTCTTCGCAAGCAGCGCATCCAAGCAGGAAATGTTCGTGA
AGCGCGGGTTGGATTGCGCCAGCAAGGGTTTTTGGTTCAGTCAATCGATGAGTCTGCTGGATTGTCTCTGGGCGGGTTAA
GTAGTTTTAATCTCGAAGAAGCGACGAGTAAGGTCACTGTCAAAGACATGGCCCTTTTCTCGCGGCAGCTTTCATCCTTG
GTCGATGCGGGGGTTCCAATTGTTAGAGCCCTAGGATTGCTGACTGAACAGACACGTAATCCCAAGCTTCGTAAAACCCT
GAAGCAGATTAATATCGATGTGCAAGAGGGCTTAAATCTCTCGGACTCGATGCGTAAGTTCCCGAAAGTTTTCGATGGTC
TCTACGTAGCGATGATTCAAGCTGGAGAGACAGGTGGCGTCTTAGATGACGTCCTCAACCGGCTTTCCAAACTACTGGAA
GATATGTCGAGATTGCGCAACCAGATGAAGTCTGCAATGACTTATCCGATGGCAGTCTTTGTGATTGCAATTCTTGTGTT
TTTAGGGATGACTATTTTTATCATCCCAACCTTTGCAGGAATTTTTGAAGACCAAGGAGCGGAGTTGCCTGGCTTCACAT
TGCTGTTGCTGTCAATTAGCCAGCTATTGAGAACACCGATCTTTTGGGGCTTCTTCCTGATCTTTCTATTTGGATCAATC
TTTGTCTTTAAACAATACTATTCAACTCCACCTGGCCGCCTCAGTGTAGACAACCTAGTGCTACGCCTGCCAGTTTTGGG
AGAGATGATTCAGAAGGCTGCCACAGCTCGCTTCTGCCGAACCTTTGGTTCACTCACAAGGGCAGGGGTGCCGATTATGA
CTGCTCTTGAAATCGTGCGAGATACCGCAGGGAATCAGGCGATCGCTCGCTCAATCGATGCAGCCCGGATGGAAGTACAG
ACTGGCGGCATGATGAGTGTGGCACTGTCGAGATATCGGGTCTTCCCCTTGATGGCTCTCAGCATGATTACGATTGGGGA
AGAGACGGGTGAACTTGACACCATGGTAAACAAAGTGGCTGACTTCTATGAAGATGAAGTCGAGCAAGCGGTCAAGGGTT
TGACCAGTTTGCTAGAGCCGATCATGATTGTGCTGGTAGGCGGTATTGTCGGCTCGATTTTGCTGGCGATGTATCTGCCA
ATGTTCAGCATTTTCGACCAGATTAAGGGGTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (278-400)

• Type II secretion system (T2SS), protein F (T2SSF) (73-196)

3D structure

• AlphaFold DB: Q31LH0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	42.469	98.78	0.42