Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JTF63_RS13890 Genome accession   NZ_CP070232
Coordinates   2866670..2867299 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 10R     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2861670..2872299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTF63_RS13875 (JTF63_13875) helD 2861912..2863966 (-) 2055 WP_001295354.1 DNA helicase IV -
  JTF63_RS13880 (JTF63_13880) yccF 2864089..2864535 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JTF63_RS13885 (JTF63_13885) yccS 2864545..2866707 (+) 2163 WP_000875058.1 YccS family putative transporter -
  JTF63_RS13890 (JTF63_13890) sxy/tfoX 2866670..2867299 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JTF63_RS13895 (JTF63_13895) sulA 2867518..2868027 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JTF63_RS13900 (JTF63_13900) ompA 2868384..2869424 (+) 1041 WP_001400178.1 porin OmpA -
  JTF63_RS13905 (JTF63_13905) matP 2869500..2869952 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JTF63_RS13910 (JTF63_13910) ycbZ 2870138..2871898 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=538814 JTF63_RS13890 WP_000839153.1 2866670..2867299(-) (sxy/tfoX) [Escherichia coli strain 10R]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=538814 JTF63_RS13890 WP_000839153.1 2866670..2867299(-) (sxy/tfoX) [Escherichia coli strain 10R]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1