Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LJX82_RS13650 Genome accession   NZ_CP085638
Coordinates   2800268..2801695 (+) Length   475 a.a.
NCBI ID   WP_000980629.1    Uniprot ID   -
Organism   Escherichia coli strain fEC.1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2795268..2806695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJX82_RS13620 (LJX82_13620) pduU 2795645..2795995 (+) 351 WP_000211394.1 propanediol utilization microcompartment protein PduU -
  LJX82_RS13625 (LJX82_13625) - 2796000..2796443 (+) 444 WP_001369832.1 EutP/PduV family microcompartment system protein -
  LJX82_RS13630 (LJX82_13630) tmaR 2796544..2796873 (-) 330 WP_000450409.1 DUF496 family protein -
  LJX82_RS13635 (LJX82_13635) yeeA 2797045..2798103 (-) 1059 WP_001200891.1 FUSC family protein -
  LJX82_RS13640 (LJX82_13640) sbmC 2798301..2798774 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  LJX82_RS13645 (LJX82_13645) dacD 2798893..2800059 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LJX82_RS13650 (LJX82_13650) sbcB 2800268..2801695 (+) 1428 WP_000980629.1 exodeoxyribonuclease I Machinery gene
  LJX82_RS13655 (LJX82_13655) tsuB 2801738..2801965 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LJX82_RS13660 (LJX82_13660) tsuA 2801979..2803037 (-) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  LJX82_RS13665 (LJX82_13665) plaP 2803216..2804574 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LJX82_RS13670 (LJX82_13670) yoeI 2804564..2804626 (-) 63 WP_010723108.1 membrane protein YoeI -
  LJX82_RS13675 (LJX82_13675) yeeY 2804841..2805770 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  LJX82_RS13680 (LJX82_13680) yeeZ 2805816..2806640 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54487.77 Da        Isoelectric Point: 5.4666

>NTDB_id=538783 LJX82_RS13650 WP_000980629.1 2800268..2801695(+) (sbcB) [Escherichia coli strain fEC.1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEAWAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=538783 LJX82_RS13650 WP_000980629.1 2800268..2801695(+) (sbcB) [Escherichia coli strain fEC.1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCATGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581