Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JTC67_RS05750 Genome accession   NZ_CP070229
Coordinates   1070705..1071334 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain EC12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1065705..1076334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTC67_RS05735 (JTC67_05670) helD 1065947..1068001 (-) 2055 WP_024240194.1 DNA helicase IV -
  JTC67_RS05740 (JTC67_05675) yccF 1068124..1068570 (+) 447 WP_001261236.1 YccF domain-containing protein -
  JTC67_RS05745 (JTC67_05680) yccS 1068580..1070742 (+) 2163 WP_000875040.1 YccS family putative transporter -
  JTC67_RS05750 (JTC67_05685) sxy/tfoX 1070705..1071334 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JTC67_RS05755 (JTC67_05690) sulA 1071553..1072062 (+) 510 WP_001357107.1 SOS-induced cell division inhibitor SulA -
  JTC67_RS05760 (JTC67_05695) ompA 1072418..1073470 (+) 1053 WP_001346420.1 porin OmpA -
  JTC67_RS05765 (JTC67_05700) matP 1073547..1073999 (-) 453 WP_233679789.1 macrodomain Ter protein MatP -
  JTC67_RS05770 (JTC67_05705) ycbZ 1074185..1075945 (+) 1761 WP_024231838.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=538781 JTC67_RS05750 WP_000839151.1 1070705..1071334(-) (sxy/tfoX) [Escherichia coli strain EC12]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=538781 JTC67_RS05750 WP_000839151.1 1070705..1071334(-) (sxy/tfoX) [Escherichia coli strain EC12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995