Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JS570_RS08940 Genome accession   NZ_CP070227
Coordinates   1900531..1901160 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain JA0072     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895531..1906160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS570_RS08920 (JS570_08895) ycbZ 1895933..1897693 (-) 1761 WP_000156492.1 Lon protease family protein -
  JS570_RS08925 (JS570_08900) matP 1897879..1898331 (+) 453 WP_000877152.1 macrodomain Ter protein MatP -
  JS570_RS08930 (JS570_08905) ompA 1898407..1899447 (-) 1041 WP_001518466.1 porin OmpA -
  JS570_RS08935 (JS570_08910) sulA 1899803..1900312 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  JS570_RS08940 (JS570_08915) sxy/tfoX 1900531..1901160 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JS570_RS08945 (JS570_08920) yccS 1901123..1903285 (-) 2163 WP_000875008.1 YccS family putative transporter -
  JS570_RS08950 (JS570_08925) yccF 1903295..1903741 (-) 447 WP_001261236.1 YccF domain-containing protein -
  JS570_RS08955 (JS570_08930) helD 1903864..1905918 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=538754 JS570_RS08940 WP_000839153.1 1900531..1901160(+) (sxy/tfoX) [Escherichia coli strain JA0072]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=538754 JS570_RS08940 WP_000839153.1 1900531..1901160(+) (sxy/tfoX) [Escherichia coli strain JA0072]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1