Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JNX00_RS01765 Genome accession   NZ_CP070223
Coordinates   359140..360768 (+) Length   542 a.a.
NCBI ID   WP_070400287.1    Uniprot ID   A0A8I1QTZ8
Organism   Hydrogenophaga sp. YM1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354140..365768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNX00_RS01740 (JNX00_01740) argS 354524..356197 (+) 1674 WP_204743902.1 arginine--tRNA ligase -
  JNX00_RS01745 (JNX00_01745) - 356206..356883 (+) 678 WP_070400283.1 SPOR domain-containing protein -
  JNX00_RS01750 (JNX00_01750) - 356962..357582 (+) 621 WP_070400284.1 thiol:disulfide interchange protein DsbA/DsbL -
  JNX00_RS01755 (JNX00_01755) lptA 357726..358349 (+) 624 WP_204743903.1 lipopolysaccharide transport periplasmic protein LptA -
  JNX00_RS01760 (JNX00_01760) lptB 358346..359140 (+) 795 WP_070400286.1 LPS export ABC transporter ATP-binding protein -
  JNX00_RS01765 (JNX00_01765) rpoN/rpoN1 359140..360768 (+) 1629 WP_070400287.1 RNA polymerase factor sigma-54 Machinery gene
  JNX00_RS01770 (JNX00_01770) - 360765..362045 (+) 1281 WP_204743904.1 THUMP domain-containing protein -
  JNX00_RS22560 - 362032..362343 (+) 312 Protein_355 PIN domain-containing protein -
  JNX00_RS22565 - 362430..362555 (+) 126 WP_345774095.1 hypothetical protein -
  JNX00_RS01780 (JNX00_01780) - 362552..363439 (+) 888 WP_204743905.1 hypothetical protein -
  JNX00_RS01785 (JNX00_01785) - 364116..365738 (-) 1623 WP_070400290.1 FMN-binding glutamate synthase family protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 58758.19 Da        Isoelectric Point: 4.6558

>NTDB_id=538716 JNX00_RS01765 WP_070400287.1 359140..360768(+) (rpoN/rpoN1) [Hydrogenophaga sp. YM1]
MKQSLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLERADEGLEREEFGLAATDAPVSAGEQIADAASA
AGPGADAGEGRNEDKASATDGDAVEASVDGASPVEESWDGDGTVEMAPDDSEWGGDAPPRGSGSGDDEETASAADLARAL
VSLQDHLHEQARCLRLSEADAAALHFLIESLDEDGYLADPLPELALALLRLQGEATAKADPSDAAATERLDAAEQGLRTA
LQLLQHMDPPGVGARDLAECLKLQILELRNTPEARAALAICGQPLELIAKRDVRKLVQLCRADEDTVRGALALIARLEPK
PGRRFADVERNIVVPDVIVTRAGRGFKVVLNPDVMPRLRVHDVYANAMRQNRGGRDGGEGGHAAMQQRLQEARWFIKNIQ
QRFDTILRVSSAIVERQRNFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSSLGTETGGN
ASSTAVRALLKQFIAAEAPAKPLSDNQLSDLLKEQGIECARRTVAKYREAMRIAPANLRKSL

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=538716 JNX00_RS01765 WP_070400287.1 359140..360768(+) (rpoN/rpoN1) [Hydrogenophaga sp. YM1]
ATGAAGCAGAGCCTGTCGCTACGCGTCTCGCAGCACCTGGCGCTGACGCCCCAGCTGCAGCAGTCGATCCGCCTGCTGCA
GCTTTCGACGCTGGAGATGGCGCAGGAGGTCGAGCAGATGCTCGACGAGAACCCCTTCCTGGAACGCGCCGACGAAGGCC
TGGAGCGCGAGGAATTCGGCCTGGCCGCGACCGATGCGCCGGTGAGCGCGGGCGAGCAGATCGCCGACGCCGCGTCCGCC
GCCGGCCCGGGCGCCGACGCCGGGGAGGGGCGCAACGAAGACAAGGCCAGCGCCACCGACGGCGACGCGGTGGAGGCCAG
TGTGGACGGCGCCTCGCCGGTGGAAGAGAGCTGGGACGGCGACGGCACGGTGGAGATGGCGCCCGACGACAGCGAGTGGG
GCGGCGACGCGCCGCCGCGCGGCAGCGGCTCCGGCGATGACGAAGAGACCGCCAGCGCGGCCGACCTCGCGCGCGCCCTG
GTGTCGCTGCAGGACCATTTGCACGAGCAGGCGCGCTGCCTGCGCCTGTCCGAGGCGGATGCTGCCGCGCTGCACTTCCT
GATCGAATCGCTGGACGAGGACGGCTACCTCGCCGACCCGCTGCCCGAACTCGCGCTGGCGCTGCTGCGCCTGCAGGGTG
AGGCCACCGCCAAGGCCGACCCGTCCGACGCCGCCGCCACCGAACGCCTCGACGCGGCCGAGCAAGGGCTGCGCACCGCC
CTGCAGCTGCTGCAGCACATGGACCCGCCCGGCGTGGGCGCGCGCGACCTGGCCGAGTGCCTGAAGCTGCAGATCCTGGA
GCTGCGCAACACGCCCGAGGCGCGCGCCGCGCTGGCGATCTGTGGGCAGCCGCTGGAGCTGATCGCCAAGCGCGACGTGC
GCAAGCTGGTGCAGCTGTGCCGCGCCGACGAGGACACCGTGCGCGGCGCGCTCGCGCTGATCGCGCGGCTGGAGCCCAAG
CCCGGACGCCGCTTCGCGGACGTCGAGCGCAACATCGTCGTGCCCGACGTCATCGTCACGCGCGCCGGCCGCGGCTTCAA
GGTGGTGCTCAACCCCGACGTGATGCCGCGCCTGCGCGTGCACGACGTGTACGCCAACGCCATGCGCCAGAACCGCGGCG
GGCGCGATGGCGGCGAAGGCGGCCACGCCGCCATGCAGCAGCGCCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAG
CAGCGCTTCGACACCATCCTGCGCGTGTCCAGCGCCATCGTCGAGCGCCAGCGCAACTTCTTCATGCACGGCGAGCTCGC
CATGCGCCCGTTGGTGCTGCGCGAGATCGCCGACGAACTGGGCCTGCACGAATCCACCATCAGCCGCGTGACCACGGCCA
AGTACATGGCCACGCCTTTCGGTACCTACGAACTGAAGTACTTCTTCGGCTCCTCGCTGGGCACCGAGACCGGCGGCAAC
GCCTCCAGCACCGCGGTGCGCGCGCTGCTCAAGCAGTTCATCGCTGCCGAGGCGCCGGCCAAGCCGCTGTCGGACAACCA
GCTCTCCGACCTGCTCAAGGAGCAGGGCATCGAGTGCGCGCGCCGCACCGTGGCCAAGTACCGCGAGGCCATGCGCATCG
CCCCGGCCAACCTCCGAAAATCGCTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(157-364)

Sigma-54, DNA binding domain (Sigma54_DBD)

(384-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.916

100

0.513