Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LJU33_RS08500 Genome accession   NZ_CP085637
Coordinates   1787166..1788593 (-) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain fECg99.1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1782166..1793593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU33_RS08465 (LJU33_08465) hisL 1782750..1782800 (-) 51 WP_001364200.1 his operon leader peptide -
  LJU33_RS08470 (LJU33_08470) yefM 1783083..1783334 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  LJU33_RS08475 (LJU33_08475) yoeB 1783331..1783585 (+) 255 WP_000767828.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  LJU33_RS08480 (LJU33_08480) yeeZ 1783668..1784492 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  LJU33_RS08485 (LJU33_08485) yeeY 1784538..1785467 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  LJU33_RS08490 (LJU33_08490) yoeI 1785682..1785744 (+) 63 WP_010723108.1 membrane protein YoeI -
  LJU33_RS08495 (LJU33_08495) plaP 1785734..1787092 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LJU33_RS08500 (LJU33_08500) sbcB 1787166..1788593 (-) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  LJU33_RS08505 (LJU33_08505) dacD 1788802..1789968 (+) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LJU33_RS08510 (LJU33_08510) sbmC 1790087..1790560 (+) 474 WP_001105390.1 DNA gyrase inhibitor SbmC -
  LJU33_RS08515 (LJU33_08515) yeeA 1790758..1791816 (+) 1059 WP_001200891.1 FUSC family protein -
  LJU33_RS08520 (LJU33_08520) tmaR 1791988..1792317 (+) 330 WP_000450409.1 DUF496 family protein -
  LJU33_RS08525 (LJU33_08525) - 1792418..1792861 (-) 444 WP_001189432.1 EutP/PduV family microcompartment system protein -
  LJU33_RS08530 (LJU33_08530) pduU 1792866..1793216 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=538701 LJU33_RS08500 WP_000980607.1 1787166..1788593(-) (sbcB) [Escherichia coli strain fECg99.1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=538701 LJU33_RS08500 WP_000980607.1 1787166..1788593(-) (sbcB) [Escherichia coli strain fECg99.1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583