Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LJN53_RS08820 Genome accession   NZ_CP085622
Coordinates   1839940..1841367 (-) Length   475 a.a.
NCBI ID   WP_000980546.1    Uniprot ID   -
Organism   Escherichia coli strain EC71     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1834940..1846367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJN53_RS08790 (LJN53_08790) yeeZ 1834995..1835819 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  LJN53_RS08795 (LJN53_08795) yeeY 1835865..1836794 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  LJN53_RS08800 (LJN53_08800) yoeI 1837009..1837071 (+) 63 WP_010723108.1 membrane protein YoeI -
  LJN53_RS08805 (LJN53_08805) plaP 1837061..1838419 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LJN53_RS08810 (LJN53_08810) tsuA 1838598..1839656 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  LJN53_RS08815 (LJN53_08815) tsuB 1839670..1839897 (+) 228 WP_217823166.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LJN53_RS08820 (LJN53_08820) sbcB 1839940..1841367 (-) 1428 WP_000980546.1 exodeoxyribonuclease I Machinery gene
  LJN53_RS08825 (LJN53_08825) dacD 1841576..1842742 (+) 1167 WP_000830143.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LJN53_RS08830 (LJN53_08830) sbmC 1842860..1843333 (+) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  LJN53_RS08835 (LJN53_08835) yeeA 1843531..1844589 (+) 1059 WP_001200892.1 FUSC family protein -
  LJN53_RS08840 (LJN53_08840) tmaR 1844761..1845090 (+) 330 WP_000450409.1 DUF496 family protein -
  LJN53_RS08845 (LJN53_08845) - 1845191..1845556 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  LJN53_RS08850 (LJN53_08850) - 1845827..1846216 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54528.82 Da        Isoelectric Point: 5.3498

>NTDB_id=538622 LJN53_RS08820 WP_000980546.1 1839940..1841367(-) (sbcB) [Escherichia coli strain EC71]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=538622 LJN53_RS08820 WP_000980546.1 1839940..1841367(-) (sbcB) [Escherichia coli strain EC71]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGTTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579