Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SPB_RS09750 Genome accession   NZ_AEUT02000001
Coordinates   1940745..1941518 (-) Length   257 a.a.
NCBI ID   WP_003104032.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935745..1946518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS09735 (SPB_2009) purC 1938502..1939209 (-) 708 WP_003105473.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  SPB_RS09740 (SPB_2010) - 1939355..1939597 (-) 243 WP_003104799.1 acyl carrier protein -
  SPB_RS09745 (SPB_2011) plsX 1939584..1940597 (-) 1014 WP_003103651.1 phosphate acyltransferase PlsX -
  SPB_RS09750 (SPB_2012) recO 1940745..1941518 (-) 774 WP_003104032.1 DNA repair protein RecO Machinery gene
  SPB_RS09755 (SPB_2013) - 1941508..1942686 (-) 1179 WP_003102893.1 pyridoxal phosphate-dependent aminotransferase -
  SPB_RS09760 (SPB_2014) - 1942797..1943759 (-) 963 WP_003103806.1 ribose-phosphate diphosphokinase -
  SPB_RS09765 (SPB_2015) - 1943868..1945178 (-) 1311 WP_003102578.1 CHAP domain-containing protein -
  SPB_RS11145 (SPB_2016) mreD 1945274..1945774 (-) 501 WP_003105481.1 rod shape-determining protein MreD -
  SPB_RS09775 (SPB_2017) mreC 1945777..1946364 (-) 588 WP_254655073.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29979.26 Da        Isoelectric Point: 5.5416

>NTDB_id=53858 SPB_RS09750 WP_003104032.1 1940745..1941518(-) (recO) [Streptococcus parauberis NCFD 2020]
METSQSHGIVLYNKNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLSSVIQPLTAADFILKLNDIGLSYIEDYNQVETYKK
INQDIFTLSYATYITALTDAALKDNEIDAQLFAFLKKTLDLMEEGLDYEVMANIFEVQILDRFGVRLNFHDCVFCHRTGL
PFDFSHKYSGVLCPQHYHEDIHRNHLDPNVVYLLDQFQAIHFDELKVISLKPEMKEKLRLFIDELYDDYVGIHLKSKKFI
DDLSTWGQIMKPSSEDN

Nucleotide


Download         Length: 774 bp        

>NTDB_id=53858 SPB_RS09750 WP_003104032.1 1940745..1941518(-) (recO) [Streptococcus parauberis NCFD 2020]
ATGGAAACTAGTCAGTCACATGGTATTGTTCTATATAATAAGAACTTTCGAGAAGATGATAAGTTAGTTAAAATCTTCAC
TGAGCAAGCTGGCAAACGGATGTTTTTTGTTAAGCATGCAGGGAAATCCAAGTTAAGTTCAGTGATTCAGCCCCTAACAG
CCGCTGATTTTATCTTAAAATTAAACGACATTGGCTTATCTTATATAGAAGATTATAATCAAGTGGAAACTTATAAAAAA
ATTAATCAAGATATTTTTACCTTGTCTTATGCCACTTATATTACGGCTTTAACCGATGCAGCTTTAAAAGATAATGAGAT
TGATGCACAACTCTTTGCCTTTCTTAAAAAGACTTTAGATTTAATGGAAGAGGGTTTAGATTATGAAGTAATGGCTAACA
TCTTTGAGGTTCAAATATTGGATCGCTTTGGGGTCAGATTAAATTTTCATGATTGTGTCTTTTGTCACCGGACAGGACTG
CCTTTTGATTTTTCGCATAAATATTCAGGTGTACTTTGTCCACAGCACTATCATGAAGATATTCACAGAAATCACTTAGA
TCCAAATGTAGTTTACTTATTAGATCAGTTTCAAGCCATTCACTTTGATGAGTTGAAAGTTATTTCTTTAAAACCGGAAA
TGAAGGAAAAACTCCGTTTGTTTATTGATGAATTGTATGACGATTATGTCGGAATTCATCTAAAGAGTAAAAAATTTATT
GACGACTTGTCCACATGGGGACAAATTATGAAGCCCAGCTCAGAGGATAATTAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

66.932

97.665

0.654

Multiple sequence alignment