Detailed information NTG0538579

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LJN50_RS22580
• Genome accession: NZ_CP085619
• Coordinates: 4622713..4623738 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain EC32
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4617713..4628738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJN50_RS22560 (LJN50_22560)	metJ	4618898..4619215 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LJN50_RS22565 (LJN50_22565)	yiiX	4619275..4619883 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
LJN50_RS22570 (LJN50_22570)	rpmE	4619944..4620156 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LJN50_RS22575 (LJN50_22575)	priA	4620359..4622557 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
LJN50_RS22580 (LJN50_22580)	cytR	4622713..4623738 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
LJN50_RS22585 (LJN50_22585)	ftsN	4623830..4624789 (+)	960	WP_000068834.1	cell division protein FtsN	-
LJN50_RS22590 (LJN50_22590)	hslV	4624882..4625412 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LJN50_RS22595 (LJN50_22595)	hslU	4625422..4626753 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
LJN50_RS22600 (LJN50_22600)	menA	4626820..4627746 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LJN50_RS22605 (LJN50_22605)	rraA	4627839..4628324 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LJN50_RS22610 (LJN50_22610)	zapB	4628409..4628654 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=538579 LJN50_RS22580 WP_000644908.1 4622713..4623738(+) (cytR) [Escherichia coli strain EC32]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=538579 LJN50_RS22580 WP_000644908.1 4622713..4623738(+) (cytR) [Escherichia coli strain EC32]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625