Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LJN50_RS09290 Genome accession   NZ_CP085619
Coordinates   1921171..1922598 (-) Length   475 a.a.
NCBI ID   WP_000980569.1    Uniprot ID   A0A0H3ELL6
Organism   Escherichia coli strain EC32     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1916171..1927598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJN50_RS09255 (LJN50_09255) hisL 1916755..1916805 (-) 51 WP_001364200.1 his operon leader peptide -
  LJN50_RS09260 (LJN50_09260) yefM 1917088..1917339 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  LJN50_RS09265 (LJN50_09265) yoeB 1917336..1917590 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  LJN50_RS09270 (LJN50_09270) yeeZ 1917673..1918497 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  LJN50_RS09275 (LJN50_09275) yeeY 1918543..1919472 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  LJN50_RS09280 (LJN50_09280) yoeI 1919687..1919749 (+) 63 WP_010723108.1 membrane protein YoeI -
  LJN50_RS09285 (LJN50_09285) plaP 1919739..1921097 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  LJN50_RS09290 (LJN50_09290) sbcB 1921171..1922598 (-) 1428 WP_000980569.1 exodeoxyribonuclease I Machinery gene
  LJN50_RS09295 (LJN50_09295) dacD 1922807..1923973 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LJN50_RS09300 (LJN50_09300) sbmC 1924092..1924565 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  LJN50_RS09305 (LJN50_09305) yeeA 1924763..1925821 (+) 1059 WP_001200894.1 FUSC family protein -
  LJN50_RS09310 (LJN50_09310) tmaR 1925993..1926322 (+) 330 WP_000450409.1 DUF496 family protein -
  LJN50_RS25240 - 1926423..1926605 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  LJN50_RS25360 (LJN50_09320) - 1926668..1926805 (+) 138 Protein_1832 transposase domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54499.79 Da        Isoelectric Point: 5.4720

>NTDB_id=538541 LJN50_RS09290 WP_000980569.1 1921171..1922598(-) (sbcB) [Escherichia coli strain EC32]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=538541 LJN50_RS09290 WP_000980569.1 1921171..1922598(-) (sbcB) [Escherichia coli strain EC32]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3ELL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583