Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K15_RS21895 Genome accession   NZ_CP070152
Coordinates   4513202..4513831 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FDAARGOS_1285     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4508202..4518831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K15_RS21875 (I6K15_21875) ycbZ 4508602..4510362 (-) 1761 Protein_4178 Lon protease family protein -
  I6K15_RS21880 (I6K15_21880) matP 4510548..4511000 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I6K15_RS21885 (I6K15_21885) ompA 4511077..4512117 (-) 1041 WP_022645481.1 porin OmpA -
  I6K15_RS21890 (I6K15_21890) sulA 4512474..4512983 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  I6K15_RS21895 (I6K15_21895) sxy/tfoX 4513202..4513831 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6K15_RS21900 (I6K15_21900) yccS 4513794..4515956 (-) 2163 WP_000875041.1 YccS family putative transporter -
  I6K15_RS21905 (I6K15_21905) yccF 4515966..4516412 (-) 447 WP_001261235.1 YccF domain-containing protein -
  I6K15_RS21910 (I6K15_21910) helD 4516535..4518589 (+) 2055 WP_022645482.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=538529 I6K15_RS21895 WP_000839153.1 4513202..4513831(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1285]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=538529 I6K15_RS21895 WP_000839153.1 4513202..4513831(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1285]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1