Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K61_RS01980 Genome accession   NZ_CP070144
Coordinates   426630..427253 (-) Length   207 a.a.
NCBI ID   WP_004100775.1    Uniprot ID   A0AAD3YQU3
Organism   Klebsiella oxytoca strain FDAARGOS_1331     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 421630..432253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K61_RS01965 (I6K61_01965) helD 421866..423920 (-) 2055 WP_204753115.1 DNA helicase IV -
  I6K61_RS01970 (I6K61_01970) - 424043..424489 (+) 447 WP_004100782.1 YccF domain-containing protein -
  I6K61_RS01975 (I6K61_01975) yccS 424507..426642 (+) 2136 WP_023320658.1 YccS family putative transporter -
  I6K61_RS01980 (I6K61_01980) sxy/tfoX 426630..427253 (-) 624 WP_004100775.1 TfoX/Sxy family DNA transformation protein Regulator
  I6K61_RS01985 (I6K61_01985) sulA 427715..428224 (+) 510 WP_032704639.1 SOS-induced cell division inhibitor SulA -
  I6K61_RS01990 (I6K61_01990) ompA 428578..429648 (+) 1071 WP_049593523.1 porin OmpA -
  I6K61_RS01995 (I6K61_01995) matP 429759..430211 (-) 453 WP_004100768.1 macrodomain Ter protein MatP -
  I6K61_RS02000 (I6K61_02000) - 430397..432154 (+) 1758 WP_004100767.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23688.71 Da        Isoelectric Point: 10.2095

>NTDB_id=538462 I6K61_RS01980 WP_004100775.1 426630..427253(-) (sxy/tfoX) [Klebsiella oxytoca strain FDAARGOS_1331]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=538462 I6K61_RS01980 WP_004100775.1 426630..427253(-) (sxy/tfoX) [Klebsiella oxytoca strain FDAARGOS_1331]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGCCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCTAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493