Detailed information NTG0538432

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: LJY68_RS00875
• Genome accession: NZ_CP085488
• Coordinates: 183795..184778 (+)
• Length: 327 a.a.
• NCBI ID: WP_001196486.1
• Uniprot ID: A7ZT85
• Organism: Escherichia coli strain VCSW8
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 178795..189778

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJY68_RS00855 (LJY68_00855)	-	179243..179743 (+)	501	WP_227534330.1	hypothetical protein	-
LJY68_RS00860 (LJY68_00860)	dppA	180095..181702 (+)	1608	WP_001222883.1	dipeptide ABC transporter substrate-binding protein DppA	-
LJY68_RS00865 (LJY68_00865)	dppB	181853..182872 (+)	1020	WP_000938855.1	dipeptide ABC transporter permease DppB	-
LJY68_RS00870 (LJY68_00870)	dppC	182882..183784 (+)	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
LJY68_RS00875 (LJY68_00875)	amiE	183795..184778 (+)	984	WP_001196486.1	dipeptide ABC transporter ATP-binding protein	Regulator
LJY68_RS00880 (LJY68_00880)	dppF	184775..185779 (+)	1005	WP_000107023.1	dipeptide ABC transporter ATP-binding subunit DppF	-
LJY68_RS00885 (LJY68_00885)	yhjV	185809..187080 (-)	1272	WP_001296805.1	aromatic amino acid transport family protein	-
LJY68_RS00890 (LJY68_00890)	-	187556..187663 (+)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
LJY68_RS00895 (LJY68_00895)	-	188039..188146 (+)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
LJY68_RS00900 (LJY68_00900)	-	188522..188629 (+)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35844.36 Da
• Isoelectric Point: 6.5814

>NTDB_id=538432 LJY68_RS00875 WP_001196486.1 183795..184778(+) (amiE) [Escherichia coli strain VCSW8]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide

• Length: 984 bp

>NTDB_id=538432 LJY68_RS00875 WP_001196486.1 183795..184778(+) (amiE) [Escherichia coli strain VCSW8]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGTAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGATGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-297)

• ABC transporter (ABC_tran) (24-181)

3D structure

• AlphaFold DB: A7ZT85

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus salivarius strain HSISS4	43.302	98.165	0.425
amiE	Streptococcus thermophilus LMG 18311	42.991	98.165	0.422
amiE	Streptococcus thermophilus LMD-9	42.991	98.165	0.422
oppD	Streptococcus mutans UA159	41.379	97.554	0.404