Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LI754_RS04435 Genome accession   NZ_CP085320
Coordinates   894446..895528 (+) Length   360 a.a.
NCBI ID   WP_044288715.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CJFA-182     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 889446..900528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI754_RS04415 gdpS 889824..890894 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  LI754_RS04420 - 891212..892267 (+) 1056 WP_000258150.1 glycosyltransferase family 4 protein -
  LI754_RS04425 - 892431..893072 (-) 642 WP_000192947.1 YigZ family protein -
  LI754_RS04430 fakB1 893216..894082 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  LI754_RS04435 comFA 894446..895528 (+) 1083 WP_044288715.1 DEAD/DEAH box helicase Machinery gene
  LI754_RS04440 - 895521..896195 (+) 675 WP_001057968.1 ComF family protein -
  LI754_RS04445 hpf 896256..896828 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LI754_RS04450 secA 897242..899773 (+) 2532 WP_044288716.1 preprotein translocase subunit SecA -
  LI754_RS04455 - 899815..899913 (+) 99 WP_031789464.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42078.61 Da        Isoelectric Point: 9.5951

>NTDB_id=538358 LI754_RS04435 WP_044288715.1 894446..895528(+) (comFA) [Staphylococcus aureus strain CJFA-182]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPLKQLLSEIPHENIIKLPARFHKKSLPVPKYCYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=538358 LI754_RS04435 WP_044288715.1 894446..895528(+) (comFA) [Staphylococcus aureus strain CJFA-182]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAAGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACTGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATTGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364