Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   LI754_RS00640 Genome accession   NZ_CP085320
Coordinates   123428..123841 (+) Length   137 a.a.
NCBI ID   WP_044291637.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CJFA-182     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 118428..128841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI754_RS00605 - 118545..118859 (-) 315 WP_044291631.1 ArsR/SmtB family transcription factor -
  LI754_RS00610 - 119152..119454 (+) 303 WP_114291279.1 hypothetical protein -
  LI754_RS00615 - 119397..120386 (+) 990 WP_237750751.1 hypothetical protein -
  LI754_RS00620 - 120440..120949 (+) 510 WP_237750752.1 DUF4209 domain-containing protein -
  LI754_RS00625 - 120993..122156 (+) 1164 WP_044291633.1 hypothetical protein -
  LI754_RS00630 - 122596..122754 (+) 159 WP_181855101.1 hypothetical protein -
  LI754_RS00635 - 122920..123327 (-) 408 WP_044291635.1 alkylhydroperoxidase -
  LI754_RS00640 lrpC 123428..123841 (+) 414 WP_044291637.1 Lrp/AsnC family transcriptional regulator Machinery gene
  LI754_RS00645 - 123903..124376 (+) 474 WP_044291639.1 GNAT family N-acetyltransferase -
  LI754_RS00650 - 124484..124942 (-) 459 Protein_128 tRNA-dihydrouridine synthase -
  LI754_RS00655 - 124967..125055 (-) 89 Protein_129 hypothetical protein -
  LI754_RS00660 - 125153..125908 (-) 756 WP_044291640.1 sulfite exporter TauE/SafE family protein -
  LI754_RS00665 cstR 125908..126168 (-) 261 WP_001105087.1 persulfide-sensing transcriptional repressor CstR -
  LI754_RS00670 cstA 126305..127372 (+) 1068 WP_000816129.1 persulfide response sulfurtransferase CstA -
  LI754_RS00675 cstB 127403..128737 (+) 1335 WP_000465473.1 persulfide dioxygenase-sulfurtransferase CstB -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 16040.40 Da        Isoelectric Point: 4.8188

>NTDB_id=538346 LI754_RS00640 WP_044291637.1 123428..123841(+) (lrpC) [Staphylococcus aureus strain CJFA-182]
MNDLINEKIINVLLNNSRITINELRKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNNRYKDF
KEFISKQDNVEFCYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQTKCQFIFSSVV

Nucleotide


Download         Length: 414 bp        

>NTDB_id=538346 LI754_RS00640 WP_044291637.1 123428..123841(+) (lrpC) [Staphylococcus aureus strain CJFA-182]
ATGAATGACTTAATAAATGAAAAAATAATCAACGTTTTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGAAAACA
AGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGTAAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTA
ACATAGATTATAAGGAATTAGGTTACGATGTAGAAATATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTT
AAAGAATTTATTTCAAAACAAGATAATGTTGAGTTTTGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCG
GTTGGAAAATATGGATGAAGTGGAAACATTTGTTGACACCATACAGCCATATGGGCAGACAAAATGTCAGTTTATCTTTT
CATCAGTTGTGTAA

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(68-134)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

43.284

97.81

0.423