Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LI911_RS06335 Genome accession   NZ_CP085318
Coordinates   1247885..1248967 (-) Length   360 a.a.
NCBI ID   WP_001566548.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CKFA-361     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1242885..1253967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI911_RS06315 - 1243494..1243598 (-) 105 WP_001790092.1 hypothetical protein -
  LI911_RS06320 secA 1243640..1246171 (-) 2532 WP_000506408.1 preprotein translocase subunit SecA -
  LI911_RS06325 hpf 1246585..1247157 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LI911_RS06330 - 1247218..1247892 (-) 675 WP_001057965.1 ComF family protein -
  LI911_RS06335 comFA 1247885..1248967 (-) 1083 WP_001566548.1 DEAD/DEAH box helicase Machinery gene
  LI911_RS06340 fakB1 1249331..1250197 (-) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  LI911_RS06345 - 1250341..1250982 (+) 642 WP_086353405.1 YigZ family protein -
  LI911_RS06350 - 1251153..1252208 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  LI911_RS06355 gdpS 1252526..1253596 (+) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42037.51 Da        Isoelectric Point: 9.6803

>NTDB_id=538314 LI911_RS06335 WP_001566548.1 1247885..1248967(-) (comFA) [Staphylococcus aureus strain CKFA-361]
MDNVTRYKITESSQSSSQAYYHLSFEMSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=538314 LI911_RS06335 WP_001566548.1 1247885..1248967(-) (comFA) [Staphylococcus aureus strain CKFA-361]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAAAT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364