Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   LI911_RS04280 Genome accession   NZ_CP085318
Coordinates   833340..834050 (+) Length   236 a.a.
NCBI ID   WP_000094091.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CKFA-361     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 828340..839050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI911_RS04225 - 828484..829158 (-) 675 WP_015977703.1 putative HNHc nuclease -
  LI911_RS04230 ssb 829172..829600 (-) 429 WP_000934783.1 single-stranded DNA-binding protein -
  LI911_RS04235 - 829600..830238 (-) 639 WP_001043071.1 ERF family protein -
  LI911_RS04240 - 830238..830717 (-) 480 WP_000002516.1 siphovirus Gp157 family protein -
  LI911_RS04245 - 830732..830992 (-) 261 WP_031807830.1 DUF1108 family protein -
  LI911_RS04250 - 831084..831245 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  LI911_RS04255 - 831347..832060 (-) 714 WP_031912126.1 BRO family protein -
  LI911_RS04260 - 832117..832326 (+) 210 WP_000642492.1 hypothetical protein -
  LI911_RS04265 - 832316..832459 (-) 144 WP_000939498.1 hypothetical protein -
  LI911_RS04270 - 832474..832917 (-) 444 WP_072399907.1 hypothetical protein -
  LI911_RS04275 - 832930..833169 (-) 240 WP_000548576.1 helix-turn-helix transcriptional regulator -
  LI911_RS04280 irvR 833340..834050 (+) 711 WP_000094091.1 helix-turn-helix domain-containing protein Regulator
  LI911_RS04285 - 834062..834208 (+) 147 WP_001049401.1 hypothetical protein -
  LI911_RS04290 - 834205..834390 (+) 186 WP_024936996.1 hypothetical protein -
  LI911_RS04295 - 834446..834949 (+) 504 WP_031788256.1 hypothetical protein -
  LI911_RS04300 - 835007..836398 (+) 1392 WP_000861305.1 recombinase family protein -
  LI911_RS04305 ffh 836612..837979 (-) 1368 WP_000863479.1 signal recognition particle protein -
  LI911_RS04310 - 838005..838337 (-) 333 WP_000531320.1 putative DNA-binding protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26884.44 Da        Isoelectric Point: 5.1973

>NTDB_id=538295 LI911_RS04280 WP_000094091.1 833340..834050(+) (irvR) [Staphylococcus aureus strain CKFA-361]
MSSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRSPKLDKLPEIANVFGVKPLDLIHDMDDSKIIEEIHNVSS
QLTPPRQSNVLKYATNQLEEQNNDSDDNLVDFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVN
GDSMEPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNKKYKDLHFYDNESVRLVGKVIL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=538295 LI911_RS04280 WP_000094091.1 833340..834050(+) (irvR) [Staphylococcus aureus strain CKFA-361]
ATGAGTTCATTTTCTTCGAATCTAGAACGTCTGATGAACAAAAGAGATATGAGTGATAGTGAATTAGCAGAATTAGTAGA
TGTAAATAGAACAACAGTCACAAGATGGAGAAAGGGAATTAGAAGTCCAAAACTAGATAAATTACCTGAAATAGCTAACG
TTTTTGGAGTTAAACCCTTAGATTTAATACATGATATGGATGATTCGAAAATTATTGAAGAAATTCATAACGTGTCATCT
CAACTCACGCCTCCAAGACAAAGCAATGTACTAAAATATGCGACTAATCAATTAGAAGAGCAAAATAATGACAGTGATGA
TAATCTGGTAGATTTCAATTCTTACATTCAAGAAAAATCCGAAGTGGATATATATGGTTGTGCGTCTGCTGGTATTGGTG
AAAGATTATATAACGAACCTATTTCAAAAGAATTCGTAAGAGGTTATGTCCCCGCACATGATATAGCTTTAAAAGTAAAT
GGAGACTCAATGGAGCCGTTATTTAAAAATGGACAAATTATATTCATTGAAAAATCTCACACTATCAAAGATGGACAAAT
AGGCGTCTTTATTATAAATGGAGATGCTTACGTAAAGAAGGTTTATGTAGAAGATAACAGATTAACGTTGGTTTCTTTAA
ATAAAAAGTATAAAGATTTACATTTTTATGATAATGAAAGTGTGAGGTTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(124-235)

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

30.769

100

0.373