Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SPB_RS06310 Genome accession   NZ_AEUT02000001
Coordinates   1262553..1264955 (+) Length   800 a.a.
NCBI ID   WP_003105039.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1257553..1269955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS06285 (SPB_1299) mutS/mutS2 1257601..1259937 (-) 2337 WP_003104070.1 endonuclease MutS2 Machinery gene
  SPB_RS06290 (SPB_1300) - 1260004..1260549 (-) 546 WP_003104122.1 CvpA family protein -
  SPB_RS06295 (SPB_1301) zapA 1260552..1260860 (-) 309 WP_003105645.1 cell division protein ZapA -
  SPB_RS06300 (SPB_1302) rnhC 1260979..1261893 (+) 915 WP_037621363.1 ribonuclease HIII -
  SPB_RS06305 (SPB_1303) lepB 1261902..1262495 (+) 594 WP_003103516.1 signal peptidase I -
  SPB_RS06310 (SPB_1304) recD/recD2/recDB 1262553..1264955 (+) 2403 WP_003105039.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SPB_RS06315 (SPB_1305) - 1265033..1265488 (+) 456 WP_003105993.1 hypothetical protein -
  SPB_RS06320 (SPB_1306) dinB 1265520..1266614 (-) 1095 WP_003103230.1 DNA polymerase IV -
  SPB_RS06325 (SPB_1307) pflB 1266820..1269147 (+) 2328 WP_003103702.1 formate C-acetyltransferase -
  SPB_RS06330 (SPB_1308) - 1269206..1269643 (+) 438 WP_003102732.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 89761.78 Da        Isoelectric Point: 4.5812

>NTDB_id=53829 SPB_RS06310 WP_003105039.1 1262553..1264955(+) (recD/recD2/recDB) [Streptococcus parauberis NCFD 2020]
MEYFFSGTVDRIIFENSSNFFKILNLMIEDTDSDFDDFEIIITGTMADIMEGEDYTFWGQLSQHPKYGQQLQLSRYQRAK
PSSSGLIKYFSSEHFKGIGKKTAERIVSLYGDNTIDKILDDPSKLEDINGFSKANREAFVAKLRINYGTEQIIAALVELG
LSNRMAFQIYDQYKEEAVERVRTNPYQLVEDIQGIGFKMSDKLAQEIGIADSAPERFRAALLHSLLEQSISQGDTYIEAR
DLLAYAIDLLEDSRQIECDPAQVAQELSHLISDEKVYNAGTKIFDASLFTAEEGIKNQLQRLLDTPFEKQISQDKIEKEV
QAIEKEFAISYDQVQKDAIYQALTSKVFILTGGPGTGKTTVIRGILEAYARINDIDLNKKDLPIVLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLVVDEFSMVDTWLANQLLGAISSNTQIIIVGDSDQLPSVGPGQVLADLL
KITSLPQIALRKIFRQSADSTIVDLANQMRQGILPVDFRDKKADRSYFDAMPQHVPTMVTKIVASAVKSGIPADEIQILA
PMYKGQAGINNLNQLMQELLNPLDNGTEFVFNEIHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDEIMMD
FDGSEVTYPRNEWLKITLAYAMSIHKSQGSEFQVVILPITRQSGRMLQRNLIYTAVTRSKSKLILLGEHSAFDYAIKNEG
DKRKTFLVQRFDQDLTTESSDQLAKIDTVENSSDSLGQAQNTIAKPLESEEPTILTTANMLSIDPLIGLTDADFKNFFKK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=53829 SPB_RS06310 WP_003105039.1 1262553..1264955(+) (recD/recD2/recDB) [Streptococcus parauberis NCFD 2020]
ATGGAATACTTTTTTTCCGGGACTGTTGATCGCATCATTTTCGAAAATAGCAGTAACTTTTTTAAAATCTTAAACCTAAT
GATTGAAGATACCGACAGTGACTTTGATGACTTTGAAATCATCATTACTGGAACCATGGCTGACATCATGGAGGGAGAAG
ATTATACCTTCTGGGGGCAATTAAGCCAACATCCCAAATATGGCCAGCAACTGCAACTCAGCCGTTACCAGCGAGCTAAA
CCAAGTTCATCTGGTCTAATCAAGTACTTTTCCAGTGAGCATTTTAAAGGAATTGGGAAAAAGACCGCCGAGAGAATTGT
CTCTTTATACGGTGACAATACGATTGATAAAATTCTTGACGACCCTAGCAAGTTAGAGGATATCAACGGCTTTTCAAAAG
CTAACCGAGAAGCCTTTGTAGCTAAGCTAAGAATCAATTACGGAACAGAACAAATCATCGCTGCACTGGTAGAATTAGGA
TTGTCTAATCGGATGGCCTTCCAAATATACGATCAATATAAAGAAGAAGCTGTCGAACGGGTTAGGACTAATCCCTATCA
ACTCGTAGAAGACATCCAAGGCATCGGCTTTAAAATGTCTGATAAATTAGCTCAGGAAATCGGTATAGCTGATTCTGCAC
CTGAACGGTTTCGGGCTGCTCTATTACATAGTTTATTGGAACAATCAATTAGCCAAGGTGATACCTACATCGAGGCGCGT
GATTTATTAGCCTATGCTATTGATTTGTTAGAAGACTCTCGACAAATTGAATGTGATCCTGCGCAAGTTGCCCAAGAATT
AAGTCATTTAATTTCTGATGAAAAAGTTTATAATGCAGGTACTAAAATATTTGATGCCTCTCTATTTACAGCTGAAGAGG
GAATTAAAAATCAACTTCAACGTTTACTAGATACCCCATTTGAGAAACAAATCAGTCAAGATAAGATTGAAAAAGAAGTA
CAAGCAATTGAGAAGGAATTTGCCATTAGCTATGATCAGGTCCAAAAGGACGCAATTTATCAAGCATTGACCAGCAAGGT
CTTTATCTTAACTGGTGGTCCAGGTACTGGTAAAACAACCGTTATCAGAGGAATTCTAGAAGCTTATGCTCGGATTAATG
ACATTGATTTAAATAAAAAAGATTTACCGATTGTTCTAGCAGCGCCTACTGGTCGAGCTGCTCGTCGGATGAATGAATTA
ACTGGCCTACCAAGTGCCACTATTCATCGTCATTTAGGCTTAAATGGTGACAATGATTACCAAGCCATGGAAGACTACTT
AGACTGTGATTTATTAGTTGTTGATGAATTTTCTATGGTTGATACTTGGTTAGCCAATCAATTATTAGGTGCCATATCAT
CGAATACCCAAATAATCATTGTTGGTGACAGTGACCAGTTACCGTCTGTAGGACCAGGTCAGGTTCTAGCAGATCTTTTG
AAAATTACCAGTCTACCACAAATCGCCCTTCGTAAAATTTTCCGTCAATCAGCTGATTCAACCATCGTTGATTTGGCAAA
TCAAATGCGTCAAGGCATATTGCCAGTAGATTTTCGAGATAAAAAAGCAGACCGTTCTTACTTTGATGCCATGCCTCAAC
ATGTTCCAACCATGGTCACAAAAATTGTCGCTTCTGCTGTTAAAAGTGGTATCCCAGCTGATGAAATTCAGATTCTTGCT
CCCATGTATAAAGGACAAGCAGGCATCAACAATCTCAATCAGCTTATGCAAGAGCTTCTCAATCCATTAGATAATGGTAC
AGAATTTGTCTTTAATGAGATACATTTTCGAAAGGGAGATAAAGTCTTACACTTAGTTAATGATGCCCAATTGAATGTCT
TTAATGGTGATATTGGTTACATTACAGATTTAATTCCAGCCAAGTACACCGAGTCCAAACAAGATGAAATTATGATGGAT
TTTGATGGGTCAGAAGTAACTTATCCTCGCAATGAATGGTTAAAAATCACCTTGGCCTATGCCATGAGTATTCATAAGTC
GCAGGGGAGTGAGTTCCAAGTGGTTATTCTTCCAATCACCCGCCAGAGTGGGCGCATGCTTCAACGGAATCTGATTTATA
CAGCTGTCACAAGGTCAAAGAGTAAATTAATTTTACTGGGTGAGCACTCAGCTTTTGATTATGCAATCAAAAATGAGGGT
GATAAACGAAAAACTTTCCTAGTGCAACGATTTGACCAAGACCTGACAACAGAATCAAGCGACCAATTAGCAAAAATTGA
TACAGTTGAAAACAGTTCGGACAGTCTAGGACAAGCCCAAAATACTATTGCAAAGCCCTTAGAATCTGAAGAACCAACGA
TTTTAACGACAGCAAATATGTTATCTATTGATCCACTGATTGGCTTGACTGATGCTGATTTTAAAAATTTTTTTAAAAAA
TAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-706)

AAA domain (AAA_30)

(331-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.8

93.75

0.401

Multiple sequence alignment