Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   SPB_RS06285 Genome accession   NZ_AEUT02000001
Coordinates   1257601..1259937 (-) Length   778 a.a.
NCBI ID   WP_003104070.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1252601..1264937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS06255 (SPB_1293) rpsR 1253436..1253675 (-) 240 WP_003102945.1 30S ribosomal protein S18 -
  SPB_RS06260 (SPB_1294) ssb 1253764..1254261 (-) 498 WP_003103409.1 single-stranded DNA-binding protein Machinery gene
  SPB_RS06265 (SPB_1295) rpsF 1254282..1254572 (-) 291 WP_003104479.1 30S ribosomal protein S6 -
  SPB_RS06270 (SPB_1296) mutY 1255558..1256697 (+) 1140 WP_037621360.1 A/G-specific adenine glycosylase -
  SPB_RS06275 (SPB_1297) - 1256775..1257137 (+) 363 WP_003105722.1 hypothetical protein -
  SPB_RS06280 (SPB_1298) trxA 1257179..1257493 (-) 315 WP_003102914.1 thioredoxin -
  SPB_RS06285 (SPB_1299) mutS/mutS2 1257601..1259937 (-) 2337 WP_003104070.1 endonuclease MutS2 Machinery gene
  SPB_RS06290 (SPB_1300) - 1260004..1260549 (-) 546 WP_003104122.1 CvpA family protein -
  SPB_RS06295 (SPB_1301) zapA 1260552..1260860 (-) 309 WP_003105645.1 cell division protein ZapA -
  SPB_RS06300 (SPB_1302) rnhC 1260979..1261893 (+) 915 WP_037621363.1 ribonuclease HIII -
  SPB_RS06305 (SPB_1303) lepB 1261902..1262495 (+) 594 WP_003103516.1 signal peptidase I -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87637.49 Da        Isoelectric Point: 6.6679

>NTDB_id=53828 SPB_RS06285 WP_003104070.1 1257601..1259937(-) (mutS/mutS2) [Streptococcus parauberis NCFD 2020]
MDIKILEQLEFQKVKEQFQTYLQTEQGKVELQQLVPTDNPEKIKDYFTEISEMEMIFIENHHFAMGSLRDVNDSLHRLEL
DADLNISELLDIKKLLLVSAEASRFFMNLENVELVALKKLFEKLEIFPQLQGSLQAINDGAFIENFASPELEAIRRKIFN
SEHQIRQSLQDVLKKHADYLSESLIASRNGRSVLPVKNTFRNKIAGVVHDISASGNTVYIEPRALVQLNEEITQLHADER
HEMARILKELSAMVRPHSRALANNAWLLGHLDFVRAKYLYLKEKKATIPTVTADKSVQLLNVRHPLLQKPVPNDLHFSKD
LTVIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADYGSKIAVFNGIFADIGDEQSIEQSLSTFSSHMTHIVSILDQAT
ADSLVLFDELGAGTDPQEGASLAMAILEELRLKEIKTMATTHYPELKAYGIESEFVENASMEFDSNSLQPTYRFMQGVPG
RSNAFEIARRLGLASHIVTDAQNFTDTDSDVNRIIEKLESQTLESRKRLEHIKEVEQDNLKFNRAVKKLYNEFSHERDKE
MEKVTKEAQEIVDLALAESESILAKLHDKSQLKPHEVIEAKTQLKKLVPQTDLSKNKVLKQAKKLRAARVGDDIIVSAYG
QRGTLINQLKDQKWEAQVGLIKMTLKEDEFTLVKAVEESQKPKKQMVNVIKKAATGSGPRARLDLRGKRYEEAMQELDTF
IDQALVNNMSQVDIIHGIGTGVIREAVTKYLRRNKHVKSFAYAPQNAGGSGCTIVTLG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=53828 SPB_RS06285 WP_003104070.1 1257601..1259937(-) (mutS/mutS2) [Streptococcus parauberis NCFD 2020]
ATGGATATAAAAATTTTAGAACAGTTAGAATTTCAAAAGGTTAAAGAACAATTTCAAACCTACCTTCAAACTGAACAAGG
GAAAGTGGAACTCCAACAGCTAGTTCCAACAGACAATCCCGAAAAGATTAAAGATTATTTTACGGAAATTTCAGAAATGG
AGATGATTTTCATTGAGAATCATCATTTTGCCATGGGAAGCTTACGGGATGTTAATGACAGCCTCCACCGCCTTGAGTTG
GATGCTGATTTGAATATTTCGGAACTCTTAGATATCAAAAAACTCTTGCTTGTCTCTGCCGAAGCCAGTCGTTTTTTTAT
GAATTTAGAAAATGTTGAATTGGTTGCCCTAAAAAAATTATTTGAGAAATTAGAAATTTTTCCTCAGTTGCAGGGAAGCC
TGCAAGCCATCAACGATGGGGCCTTCATAGAAAACTTTGCCAGTCCAGAATTGGAAGCCATCCGTCGCAAGATTTTTAAT
AGTGAACACCAAATTCGTCAATCGCTTCAGGATGTGCTCAAGAAACATGCTGACTATCTGTCAGAATCATTGATTGCCAG
TCGGAACGGCCGTAGCGTGCTTCCGGTTAAAAACACCTTTAGAAACAAAATCGCAGGGGTTGTCCACGATATCTCAGCAT
CTGGGAATACAGTCTATATTGAACCACGAGCTTTGGTCCAATTAAATGAAGAAATAACCCAGTTGCATGCTGATGAACGT
CATGAAATGGCACGGATTCTTAAAGAACTCTCAGCCATGGTTCGTCCACATAGTCGTGCTCTTGCCAATAATGCTTGGTT
ACTAGGACATTTAGATTTTGTTCGAGCAAAATATCTTTATCTGAAGGAGAAGAAGGCGACTATTCCAACTGTCACTGCTG
ATAAATCAGTGCAATTGTTGAATGTTCGTCATCCTCTCTTGCAAAAGCCAGTTCCTAATGACCTACACTTTTCTAAAGAC
TTAACAGTTATTGTTATTACGGGTCCTAATACGGGTGGTAAGACAATCATGTTAAAAACCCTTGGTTTGGCTCAGTTAAT
GGGACAGTCTGGTTTGCCAATTCTAGCTGACTACGGTTCGAAGATTGCTGTTTTCAATGGAATTTTTGCCGATATTGGCG
ATGAGCAATCGATTGAACAAAGCTTGTCGACCTTCTCTAGTCATATGACCCACATTGTGTCAATTCTTGACCAAGCGACA
GCAGATAGTCTAGTTCTCTTTGATGAACTAGGTGCTGGTACCGATCCGCAAGAAGGTGCTAGCTTAGCGATGGCCATTCT
AGAAGAACTTCGCTTGAAAGAAATCAAGACCATGGCGACGACCCATTATCCTGAGTTGAAAGCTTACGGGATTGAGTCGG
AGTTTGTTGAAAATGCTAGTATGGAGTTTGATAGTAATAGTCTTCAGCCAACCTATCGTTTTATGCAAGGCGTGCCTGGT
CGTTCTAATGCTTTTGAAATTGCAAGACGGTTGGGCCTAGCCAGTCATATTGTGACGGACGCTCAGAATTTTACTGATAC
GGATAGTGACGTCAATCGGATTATTGAAAAGTTAGAAAGTCAGACTTTGGAGAGTCGGAAACGTCTTGAACATATTAAAG
AGGTCGAGCAGGATAACCTTAAGTTCAATCGTGCTGTTAAAAAGCTGTATAATGAGTTTTCTCATGAGCGTGATAAGGAA
ATGGAAAAGGTTACTAAAGAGGCGCAAGAGATTGTTGATTTGGCCTTGGCGGAAAGTGAGTCTATCTTAGCTAAGTTACA
TGACAAATCGCAATTGAAACCACATGAAGTCATTGAAGCTAAGACACAATTGAAAAAGTTAGTACCTCAAACTGATTTAT
CCAAAAATAAAGTTTTGAAACAGGCTAAGAAGTTAAGAGCTGCGCGTGTTGGTGATGATATCATTGTTTCTGCATATGGT
CAACGTGGTACTTTAATTAATCAATTAAAAGATCAAAAATGGGAAGCACAAGTGGGGTTAATTAAAATGACCCTCAAAGA
GGATGAATTTACCTTGGTTAAGGCTGTTGAAGAAAGCCAGAAACCTAAAAAACAAATGGTTAATGTCATTAAGAAAGCAG
CAACAGGTTCTGGACCTAGAGCCCGTCTTGACTTACGTGGCAAACGTTATGAAGAAGCCATGCAAGAGCTGGATACCTTT
ATTGACCAAGCTTTAGTTAATAACATGAGTCAAGTTGATATCATTCATGGGATTGGTACTGGGGTTATTCGTGAAGCAGT
TACTAAATATTTGAGACGCAACAAACATGTTAAGAGTTTTGCTTACGCTCCGCAAAATGCGGGAGGGTCAGGTTGTACAA
TTGTGACCTTGGGTTAG

Domains

Predicted by InterProScan.

Smr domain (Smr)

(703-777)

MutS domain V (MutS_V)

(324-505)

MutS2 and Smr-associated SH3 domain (MSSS)

(630-669)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.29

100

0.398

Multiple sequence alignment