Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AXY_RS09080 Genome accession   NC_018704
Coordinates   1847046..1848863 (-) Length   605 a.a.
NCBI ID   WP_015010508.1    Uniprot ID   K0IZJ4
Organism   Amphibacillus xylanus NBRC 15112     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1842046..1853863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXY_RS09060 (AXY_17820) - 1842785..1843405 (-) 621 WP_015010503.1 GTP pyrophosphokinase family protein -
  AXY_RS09065 (AXY_17830) - 1843564..1844139 (+) 576 WP_015010504.1 CYTH domain-containing protein -
  AXY_RS09070 (AXY_17840) - 1844257..1845156 (+) 900 WP_015010505.1 DsbA family protein -
  AXY_RS09075 (AXY_17860) - 1845640..1846839 (+) 1200 WP_015010507.1 MFS transporter -
  AXY_RS09080 (AXY_17870) pepF 1847046..1848863 (-) 1818 WP_015010508.1 oligoendopeptidase F Regulator
  AXY_RS12305 (AXY_17880) - 1849044..1850195 (-) 1152 WP_015010509.1 competence protein CoiA -
  AXY_RS09090 (AXY_17890) mecA 1850313..1850999 (-) 687 WP_015010510.1 adaptor protein MecA -
  AXY_RS09095 (AXY_17900) spxA 1851223..1851618 (-) 396 WP_015010511.1 transcriptional regulator SpxA -
  AXY_RS09100 (AXY_17910) - 1851958..1853175 (-) 1218 WP_015010512.1 putative glycoside hydrolase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70260.12 Da        Isoelectric Point: 4.6971

>NTDB_id=53826 AXY_RS09080 WP_015010508.1 1847046..1848863(-) (pepF) [Amphibacillus xylanus NBRC 15112]
MTKEASKLQSREEIPVERTWRLEDIFATDDIWEEERKAVTEELKKFSAFKGTLADSADQLYQLLTLEDAVSERIGKLYTY
AHMRHDQDTTNSFYQALNAKALTLYTEAASEMSFIVPEILAIDKEKLDQFVKEKPELELYNKVLTDIVRQAEHVLSEQEE
ALLAQMSEVIDSSSQTFGALNNADLTFPTIKDEDGNEVELTHGRYTNFMESTKRAVRRDAFLAMYHTYKKFINTFASTLS
GQVKKDNTMAKVRKYTSARAAALDRNNIPETVYDNLVEAVNDRIDLLHRYVKLRKKILGLDEMNMYDMYTPLVKDVDFKY
TYEQAQQILIDGLAPLGEEYIERMKEGFDNRWVDVEENKGKRSGAYSSGVYGTNPYILMNWQDNLNNVFTLAHEFGHSMH
SLYTRENQPYRYGNYSIFVAEVASTLNESLLNEYLVKRTEDPKEKLYLLNNFLEGFRGTVFRQTMFAEFEHLIHKLDQEG
EALTPDTLTKHYYELNKKYYGEDVIHDEEIGLEWARIPHFYYNYYVYQYATGYSAAQALSLKILKEGKPAIDRYFGFLKA
GSSDYPIEVLKQAGVDMTEKTPILQALDIFEEKLNEMEALFEELN

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=53826 AXY_RS09080 WP_015010508.1 1847046..1848863(-) (pepF) [Amphibacillus xylanus NBRC 15112]
TTGACAAAAGAAGCGAGTAAATTACAGTCAAGGGAAGAGATTCCTGTAGAGAGAACGTGGCGATTAGAAGATATTTTTGC
TACGGACGACATTTGGGAAGAGGAGAGAAAGGCAGTTACTGAGGAGTTGAAGAAGTTTTCTGCTTTTAAAGGCACTTTAG
CAGACTCTGCTGATCAGCTCTATCAGCTGCTTACATTAGAGGATGCTGTATCTGAACGAATTGGTAAGCTATATACATAT
GCCCACATGCGTCATGACCAAGATACAACCAATTCATTCTATCAAGCATTAAATGCGAAAGCACTAACGCTGTATACTGA
AGCAGCTAGCGAAATGAGCTTTATTGTTCCGGAAATTTTAGCAATTGATAAGGAAAAACTTGATCAGTTCGTTAAAGAAA
AACCAGAACTTGAACTATATAATAAAGTATTAACAGATATAGTTCGTCAAGCTGAGCATGTATTATCAGAACAAGAAGAA
GCACTTCTAGCGCAAATGAGTGAAGTGATTGATAGTTCTTCACAAACATTTGGTGCCCTTAATAATGCCGATTTAACGTT
CCCAACAATTAAAGATGAAGACGGCAACGAAGTAGAATTAACACACGGTCGTTACACTAATTTTATGGAATCAACTAAAC
GAGCAGTTCGTCGTGATGCATTCTTAGCTATGTATCATACGTATAAGAAGTTTATTAACACATTTGCATCCACATTATCT
GGCCAAGTGAAAAAAGATAATACGATGGCAAAAGTACGAAAATATACATCTGCTAGAGCAGCTGCTTTAGACCGAAATAA
CATTCCAGAAACTGTTTATGATAACTTAGTTGAAGCAGTTAACGATAGAATTGATCTTTTACATCGCTATGTAAAATTAC
GTAAGAAAATTCTTGGTCTTGATGAGATGAACATGTACGATATGTACACACCTCTCGTTAAGGATGTTGATTTTAAATAT
ACTTATGAGCAAGCACAGCAAATTTTAATCGATGGCCTTGCTCCACTTGGGGAAGAGTATATTGAGCGAATGAAGGAAGG
TTTTGACAACCGCTGGGTAGACGTTGAAGAAAATAAAGGTAAACGTAGTGGAGCATATTCATCAGGAGTATATGGTACTA
ACCCATATATTTTAATGAACTGGCAAGATAACCTAAATAACGTCTTTACACTAGCTCACGAGTTTGGTCACTCAATGCAT
AGCCTATATACACGTGAAAACCAACCTTATCGCTATGGTAACTATTCTATTTTCGTTGCAGAAGTTGCATCAACGTTAAA
TGAATCGTTACTAAATGAGTATTTAGTTAAGCGTACAGAAGATCCAAAAGAGAAACTCTACTTACTAAATAACTTCTTAG
AAGGCTTTAGAGGTACTGTTTTCCGTCAGACAATGTTTGCTGAATTTGAGCATTTAATTCATAAGCTTGATCAAGAAGGT
GAAGCATTAACACCTGATACATTGACTAAACATTATTATGAGTTAAATAAGAAGTACTATGGTGAAGATGTCATTCATGA
TGAAGAAATCGGCTTAGAATGGGCACGTATCCCACACTTCTATTACAATTATTATGTTTATCAATATGCAACAGGCTATT
CAGCAGCTCAAGCCTTATCACTGAAAATCTTAAAAGAAGGAAAACCTGCAATTGATCGCTACTTCGGTTTCTTAAAAGCA
GGAAGCAGTGATTATCCAATTGAAGTATTAAAACAAGCAGGTGTAGATATGACTGAGAAGACACCGATCTTGCAAGCACT
AGATATTTTTGAAGAAAAACTGAACGAAATGGAAGCATTATTTGAAGAATTAAACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(208-588)

Oligopeptidase F (Peptidase_M3_N)

(118-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0IZJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.327

98.182

0.484

Multiple sequence alignment