Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LJA35_RS32410 Genome accession   NZ_CP085300
Coordinates   7195692..7196714 (-) Length   340 a.a.
NCBI ID   WP_102931567.1    Uniprot ID   -
Organism   Streptomyces sp. BSE6.1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7190692..7201714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA35_RS32380 - 7190981..7192228 (+) 1248 WP_233647547.1 sensor histidine kinase -
  LJA35_RS32385 - 7192225..7192890 (+) 666 WP_102931572.1 response regulator transcription factor -
  LJA35_RS32390 - 7192851..7193135 (-) 285 WP_233647549.1 DUF6332 family protein -
  LJA35_RS32395 - 7193212..7193610 (+) 399 WP_125633863.1 MarR family transcriptional regulator -
  LJA35_RS32400 - 7193634..7194374 (-) 741 WP_233647551.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  LJA35_RS32405 - 7194439..7195611 (-) 1173 WP_102931568.1 MFS transporter -
  LJA35_RS32410 cytR 7195692..7196714 (-) 1023 WP_102931567.1 LacI family DNA-binding transcriptional regulator Regulator
  LJA35_RS32415 - 7196993..7198354 (+) 1362 WP_233647553.1 sugar ABC transporter substrate-binding protein -
  LJA35_RS32420 - 7198351..7199283 (+) 933 WP_197924691.1 sugar ABC transporter permease -
  LJA35_RS32425 - 7199286..7200221 (+) 936 WP_233647555.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36704.74 Da        Isoelectric Point: 6.7778

>NTDB_id=538244 LJA35_RS32410 WP_102931567.1 7195692..7196714(-) (cytR) [Streptomyces sp. BSE6.1]
MAGSTLRDVARRAGVSIRTVSNVVNGSVPVSDELRVRVQAALDELDYRPNLVARNLRRGRSGMIALVVPELDVPYFAELA
REVITAARAHGYVVMLDQTDGDGERERELLGRESRATMFDGLLLSPLSISADELRRRTNRVPVVLLGEHIFNGSFHHVAI
DNVVAARDATEHLLGLGRRRIAAIGDQPYSTGETAQLRTTGYRQALERAGVTVDEELIVPTPRFHRHLGAQAMERLLALP
EPPDAVFCYNDLLAIGAMHTLTRAGVRVPDDIAVVGVDGIQEGRYSSPSLTTVAPDKAAIARTAVSTLLGVIDGSAPAPT
EAKAPHRLVVRESTTGARAD

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=538244 LJA35_RS32410 WP_102931567.1 7195692..7196714(-) (cytR) [Streptomyces sp. BSE6.1]
ATGGCCGGCTCCACGCTCCGCGACGTCGCCCGACGCGCCGGAGTCTCGATCCGCACCGTGTCCAACGTGGTCAACGGTTC
GGTGCCCGTCTCCGACGAGTTGCGGGTCCGCGTGCAGGCCGCGCTCGACGAGCTCGACTACCGGCCGAACCTGGTGGCCC
GCAATCTCCGCCGGGGCCGCAGCGGCATGATCGCTCTGGTCGTTCCCGAGCTGGACGTGCCGTACTTCGCCGAACTGGCC
CGCGAGGTGATCACCGCGGCCCGCGCCCACGGTTACGTGGTCATGCTCGACCAGACCGACGGCGACGGAGAGCGCGAGCG
GGAGCTGCTGGGCCGGGAGTCGCGCGCCACGATGTTCGACGGCCTGCTGCTGAGCCCGCTGTCCATCTCGGCGGACGAAC
TGCGCCGGCGCACCAACCGGGTGCCCGTCGTGCTGCTCGGCGAGCACATCTTCAACGGCAGCTTCCATCACGTGGCGATC
GACAACGTCGTCGCGGCCCGGGATGCGACGGAACACCTCCTCGGCCTCGGCCGCCGGCGCATCGCGGCCATCGGCGATCA
GCCCTACAGCACCGGCGAGACCGCGCAGTTGCGCACGACCGGGTACCGGCAGGCGCTGGAGCGCGCGGGGGTCACGGTGG
ACGAGGAGCTGATCGTCCCCACGCCGCGCTTCCACCGCCACCTCGGCGCCCAGGCCATGGAGCGGCTGCTCGCCCTTCCG
GAACCGCCCGACGCGGTCTTCTGCTACAACGACCTGCTGGCCATCGGCGCCATGCACACCCTGACCCGCGCGGGGGTGCG
GGTGCCCGACGACATCGCCGTCGTCGGTGTGGACGGCATCCAGGAGGGCCGGTACAGCTCGCCGTCGCTGACCACCGTCG
CCCCGGACAAGGCCGCCATCGCGCGCACGGCGGTCAGCACCCTGCTCGGCGTCATCGACGGCTCGGCACCCGCACCGACG
GAGGCCAAGGCGCCGCACCGGCTGGTGGTGCGGGAGAGCACGACGGGGGCACGGGCCGACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.323

98.235

0.376
  cytR Vibrio parahaemolyticus RIMD 2210633

39.048

92.647

0.362