Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LJA35_RS24920 Genome accession   NZ_CP085300
Coordinates   5601863..5603596 (-) Length   577 a.a.
NCBI ID   WP_102931589.1    Uniprot ID   -
Organism   Streptomyces sp. BSE6.1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5596863..5608596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA35_RS24910 - 5598655..5599856 (+) 1202 Protein_4930 RNA polymerase sigma factor -
  LJA35_RS24915 rcrQ 5599935..5601863 (-) 1929 WP_233646738.1 ABC transporter ATP-binding protein Regulator
  LJA35_RS24920 rcrP 5601863..5603596 (-) 1734 WP_102931589.1 ABC transporter ATP-binding protein Regulator
  LJA35_RS24925 - 5603752..5605200 (-) 1449 WP_102931588.1 FGGY family carbohydrate kinase -
  LJA35_RS24930 - 5605249..5605554 (-) 306 WP_164712967.1 YtxH domain-containing protein -
  LJA35_RS24950 - 5606373..5607230 (-) 858 WP_233646739.1 hypothetical protein -
  LJA35_RS24955 - 5607456..5608340 (-) 885 WP_233646740.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62540.75 Da        Isoelectric Point: 6.1941

>NTDB_id=538228 LJA35_RS24920 WP_102931589.1 5601863..5603596(-) (rcrP) [Streptomyces sp. BSE6.1]
MLIRLLRTYLRPYKKPIALLVALQFLQTCASLYLPTLNADIIDNGVVEGDSGYILSYGALMIGISLAQVVCNIGAVFYGA
RTAAALGRDVRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMSFTLMVSAPIMCVGGIVMALGLDVPLSGV
LLGVVPVLAICVTLIVRKLRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANTELTEVSLGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTESSVVP
PVAPVTELRRHGHLEIREAGFRYPGAEEPVLRNIGLVAKPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVNGVDVR
TVDPKTLAKVVSLVPQKPYLFAGTVATNLRYGNPDATDEELWHALAVAQAKEFVSELEGGLDAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGVGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=538228 LJA35_RS24920 WP_102931589.1 5601863..5603596(-) (rcrP) [Streptomyces sp. BSE6.1]
GTGCTCATACGACTACTGCGGACCTATCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGGCGCTGCAGTTCCTGCA
GACCTGCGCCTCCCTCTACCTGCCGACCCTGAACGCGGACATCATCGACAACGGTGTCGTGGAAGGTGACTCGGGCTACA
TCCTGAGCTACGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTGGTCTGCAACATCGGTGCCGTCTTCTACGGCGCG
CGCACCGCCGCCGCGCTCGGCCGGGACGTGCGCGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTGGG
CCACTTCGGCGCGCCCTCGCTGATCACGCGGACCACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGTCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGATGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGCTCGGGGTCGTGCCGGTGCTGGCGATCTGCGTCACGCTGATCGTGCGGAAGCTGCGCCCGCTGTTCCGGAAGATGCA
GGTGCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGTTTCCGGAAGGCCAACACCGAGCTGACCGAGGTGTCCCTCGGCACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGCATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGGGACCGAGAGCAGTGTGGTGCCG
CCGGTGGCGCCGGTCACCGAGCTGCGCCGGCACGGGCACCTGGAGATCCGGGAGGCGGGCTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTCAGGAACATCGGCCTGGTGGCCAAGCCGGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCGACGCTGCTGGGCCTGGTCCCCCGGCTCTTCGACGCCACCGACGGGGAGGTCCTGGTCAACGGCGTCGACGTGCGC
ACCGTCGACCCGAAGACGCTGGCCAAGGTGGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCGCCGGCACCGTCGCGAC
CAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGCGGTGGCGCAGGCCAAGGAGTTCG
TCTCCGAACTGGAGGGCGGGCTCGACGCGCCGATCTCCCAGGGCGGCACCAACGTGTCCGGCGGTCAGCGCCAGCGGCTC
GCCATCGCGCGGACGCTGGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCGCTGCGGGCCGCGCTGGCCCAGGAGACCGCCGAGGCGACGGTGGTCATCGTGGCGCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCGTCGTGCTGGACGAGGGGCGGGTGGTCGGCGTGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.076

97.574

0.381