Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LJA35_RS24915 Genome accession   NZ_CP085300
Coordinates   5599935..5601863 (-) Length   642 a.a.
NCBI ID   WP_233646738.1    Uniprot ID   -
Organism   Streptomyces sp. BSE6.1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5594935..5606863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA35_RS24900 - 5595309..5596574 (+) 1266 WP_233646737.1 FAD-dependent oxidoreductase -
  LJA35_RS24905 dnaG 5596605..5598530 (+) 1926 WP_125631851.1 DNA primase -
  LJA35_RS24910 - 5598655..5599856 (+) 1202 Protein_4930 RNA polymerase sigma factor -
  LJA35_RS24915 rcrQ 5599935..5601863 (-) 1929 WP_233646738.1 ABC transporter ATP-binding protein Regulator
  LJA35_RS24920 rcrP 5601863..5603596 (-) 1734 WP_102931589.1 ABC transporter ATP-binding protein Regulator
  LJA35_RS24925 - 5603752..5605200 (-) 1449 WP_102931588.1 FGGY family carbohydrate kinase -
  LJA35_RS24930 - 5605249..5605554 (-) 306 WP_164712967.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69569.88 Da        Isoelectric Point: 5.5586

>NTDB_id=538227 LJA35_RS24915 WP_233646738.1 5599935..5601863(-) (rcrQ) [Streptomyces sp. BSE6.1]
MAGPAGRMMAGGGPDQRSMDFKGSSKRLVAQFRPERATLFTLLACVVVSVGLNVVGPKILGRATDLVFAGIVGRDMPSGA
TKEQVLDSMREHGDGNVADMLRSTDFTPGQGIDFGAVGEVLLLALATFAVAGLLMAVATRLVNRTVNRTMFRLREHVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTMPLSFVVATRVGK
RSQPQFVQQWRSTGALNAHIEEMYTGHALVKVFGRQEESAKQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGQLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPIPGARPEDLRGRVELE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHAELLAADGAYARLYKAQFAEAVAE
VG

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=538227 LJA35_RS24915 WP_233646738.1 5599935..5601863(-) (rcrQ) [Streptomyces sp. BSE6.1]
ATGGCCGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGCCCCGACCAGCGTTCGATGGACTTCAAGGGGTCGAGCAAACG
GCTCGTCGCCCAGTTCCGGCCGGAGCGGGCGACGCTGTTCACGCTGCTGGCCTGCGTGGTCGTCAGCGTCGGCCTCAACG
TGGTCGGGCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCGTCCGGGGCC
ACGAAGGAGCAGGTCCTGGACTCCATGCGCGAGCACGGTGACGGCAACGTCGCCGACATGCTCCGCAGCACGGACTTCAC
CCCCGGCCAGGGCATCGACTTCGGCGCGGTGGGCGAGGTGCTGCTCCTGGCGCTGGCGACCTTCGCGGTGGCCGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTCAACCGCACGGTCAACCGGACGATGTTCCGGCTGCGCGAGCACGTGCAGACGAAG
CTGTCCCGGCTGCCGCTGTCCTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTGAGCCGCGCGACCAACGACATCGACAA
CATCCAGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCCCTGGTGACCATGCCGCTGTCCTTCGTGGTGGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCTCGACGGGCGCGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCCGCGAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTACGTGCTGGTCGCG
GTGGTCGGCGGTCTGCGGGTGGCCTCGGGCCAGCTGTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCGTCGGCGGAGCGGATCTTCGAGC
TCCTGGACGCCGAGGAGCAGTCGGCGGACCCGATCCCGGGCGCCCGCCCGGAGGACCTGCGCGGCCGGGTGGAGCTGGAG
CACGTCTCCTTCCGCTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTGGAGCCGGGCCACACGGTCGC
CATCGTCGGCCCGACGGGCGCGGGCAAGACGACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGA
TCACCCTGGACGGCGTCGACATCGCGAAGATGTCCCGGGACGAGCTGCGGGCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCCTCGCGGGAGGTCACCCGCGGGGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCCGACCGGTTCGTACGGACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGG
GGGTGAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTGCTGGACGAG
GCGACGTCGTCGGTGGACACGCGGACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTGGTCATGGAGGACGGGGCGATCGTGGAGCAGG
GGGCGCACGCGGAGCTGCTGGCGGCGGATGGCGCGTACGCGCGGCTGTACAAGGCTCAGTTCGCGGAGGCTGTGGCCGAG
GTGGGGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(40-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.734

97.04

0.405