Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LJA35_RS12880 Genome accession   NZ_CP085300
Coordinates   2961760..2962743 (-) Length   327 a.a.
NCBI ID   WP_125628974.1    Uniprot ID   A0ABW8B2S0
Organism   Streptomyces sp. BSE6.1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2956760..2967743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA35_RS12855 - 2957087..2957950 (+) 864 WP_233645758.1 helix-turn-helix transcriptional regulator -
  LJA35_RS12860 - 2957947..2958153 (+) 207 WP_134653630.1 DUF397 domain-containing protein -
  LJA35_RS12865 - 2958143..2958337 (-) 195 WP_030145837.1 hypothetical protein -
  LJA35_RS12870 - 2958524..2960647 (+) 2124 WP_134653629.1 prolyl oligopeptidase family serine peptidase -
  LJA35_RS12875 - 2960649..2961767 (-) 1119 WP_233645759.1 dipeptide ABC transporter ATP-binding protein -
  LJA35_RS12880 amiE 2961760..2962743 (-) 984 WP_125628974.1 ABC transporter ATP-binding protein Regulator
  LJA35_RS12885 - 2962752..2963732 (-) 981 WP_164712822.1 ABC transporter permease -
  LJA35_RS12890 - 2963725..2964648 (-) 924 WP_102930859.1 ABC transporter permease -
  LJA35_RS12895 - 2964662..2966296 (-) 1635 WP_102930860.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35925.69 Da        Isoelectric Point: 6.4999

>NTDB_id=538196 LJA35_RS12880 WP_125628974.1 2961760..2962743(-) (amiE) [Streptomyces sp. BSE6.1]
MLLEVRDLHVEFHTRDGVAKAVNGVSYGVDAGETLAVLGESGSGKSVTAQTIMGILDIPPGRVTAGEILFEGRDLLKLKE
EERRKVRGAEMAMIFQDALSSLNPVLTVGAQLAEMFTVHRGMSRKDAHAKAVELMDRVRIPAAKERVKQYPHQFSGGMRQ
RIMIAMAMALEPKLIIADEPTTALDVTVQAQVMDLLAELQRELHMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHD
IYKAPAHPYTRGLLESIPRLDQKGQELYAIKGLPPNLTRIPPGCAFHPRCPMAQDVCRTDVPPLYDVTESDAERGSACHF
WRECLHG

Nucleotide


Download         Length: 984 bp        

>NTDB_id=538196 LJA35_RS12880 WP_125628974.1 2961760..2962743(-) (amiE) [Streptomyces sp. BSE6.1]
ATGCTGCTCGAAGTGCGCGACCTGCACGTGGAGTTCCACACCCGCGACGGCGTCGCCAAGGCCGTCAACGGCGTCAGCTA
CGGCGTGGACGCGGGCGAGACCCTCGCGGTGCTCGGCGAGTCCGGCTCCGGCAAGTCCGTCACCGCCCAGACGATCATGG
GCATCCTCGACATCCCGCCGGGCAGGGTCACCGCGGGGGAGATCCTCTTCGAGGGCCGGGACCTGCTGAAGCTGAAGGAG
GAGGAACGCCGGAAGGTCCGCGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCCGTCCTGAC
CGTCGGCGCCCAGCTCGCCGAGATGTTCACCGTGCACCGCGGCATGTCCCGCAAGGACGCCCACGCCAAGGCCGTCGAGC
TGATGGACCGGGTGCGCATCCCGGCCGCGAAGGAGCGGGTGAAGCAGTATCCGCACCAGTTCTCCGGCGGTATGCGCCAG
CGCATCATGATCGCGATGGCGATGGCCCTGGAGCCCAAGCTGATCATCGCCGACGAACCGACCACCGCGCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGATCTGCTCGCGGAGCTCCAGCGCGAGCTGCACATGGGGCTCATCCTCATCACCCACGACC
TCGGTGTGGTCGCCGACGTCGCGGACAAGATCGCGGTCATGTACGCGGGCCGCATCGTGGAGACGGCCCCGGTCCACGAC
ATCTACAAGGCACCCGCCCACCCGTACACCCGCGGCCTCCTGGAATCCATCCCGCGCCTCGACCAGAAGGGCCAGGAGCT
CTACGCCATCAAGGGCCTGCCGCCCAACCTCACCCGCATCCCGCCCGGCTGCGCCTTCCACCCCCGCTGCCCGATGGCCC
AGGACGTCTGCCGCACCGACGTACCGCCCCTGTACGACGTGACGGAGTCCGACGCCGAGCGGGGCAGCGCCTGCCACTTC
TGGAGGGAGTGCCTGCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.5

97.859

0.465
  amiE Streptococcus thermophilus LMG 18311

46.875

97.859

0.459
  amiE Streptococcus thermophilus LMD-9

46.875

97.859

0.459
  oppD Streptococcus mutans UA159

47.573

94.495

0.45