Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AXY_RS06100 Genome accession   NC_018704
Coordinates   1223431..1225161 (+) Length   576 a.a.
NCBI ID   WP_015009918.1    Uniprot ID   -
Organism   Amphibacillus xylanus NBRC 15112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1218431..1230161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXY_RS06070 (AXY_11750) folD 1218690..1219547 (+) 858 WP_015009912.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  AXY_RS06075 (AXY_11760) xseA 1219564..1220913 (+) 1350 WP_015009913.1 exodeoxyribonuclease VII large subunit -
  AXY_RS06080 (AXY_11770) xseB 1220906..1221133 (+) 228 WP_015009914.1 exodeoxyribonuclease VII small subunit -
  AXY_RS06085 (AXY_11780) - 1221136..1222020 (+) 885 WP_015009915.1 polyprenyl synthetase family protein -
  AXY_RS06090 (AXY_11790) - 1222103..1222921 (+) 819 WP_015009916.1 TlyA family RNA methyltransferase -
  AXY_RS06095 (AXY_11800) ahrC 1222950..1223399 (+) 450 WP_015009917.1 transcriptional regulator AhrC/ArgR -
  AXY_RS06100 (AXY_11810) recN 1223431..1225161 (+) 1731 WP_015009918.1 DNA repair protein RecN Machinery gene
  AXY_RS06105 (AXY_11820) spoIVB 1225350..1226633 (+) 1284 WP_015009919.1 SpoIVB peptidase -
  AXY_RS06110 (AXY_11830) spo0A 1226919..1227698 (+) 780 WP_015009920.1 sporulation transcription factor Spo0A -
  AXY_RS06115 (AXY_11840) safA 1228135..1228728 (+) 594 WP_015009921.1 SafA/ExsA family spore coat assembly protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 65388.88 Da        Isoelectric Point: 4.6698

>NTDB_id=53819 AXY_RS06100 WP_015009918.1 1223431..1225161(+) (recN) [Amphibacillus xylanus NBRC 15112]
MLSELSIQNFTIINQLTISFNDGLTVLTGETGAGKSIIIDAIELLTGGRGSVEYVRHGKNKAVLEGLFTIDNPKHAIYKL
FDKYGIEYDQEGMIILHRTISAKGKSICRVNGSLVTLAILREFGQTLIDIHSQHETQSLLDSSRHLSLLDMFNQEHENDR
FNDYQRVYNKLKKAKVVYDSLKNNEQESIQRLDLLRFQLNEITQAELSVNEDIELRQEREKLVNFEQIYENVTEAYNSLR
GEHKGLDWLSMGSAALETASSLEPELEKLSESYSNQYYMLEEISIQLRNYLDQMSYEPERLAEIESRLNEIQLLIRKYGS
NVNEIIEYAAEIEDEIETLENRDQSLQEMADEINELSEDALIEAKQLHDRRVQGAKRLIDVIKAELIDLYMEKTQFETEI
EIRAGKPGDPELSGKPVHLGENGFDQVRFLLSTNPGEPVKPLDKVASGGELSRIMLAFKKVFAKHQGVTSVIFDEVDTGV
SGRVAQAIAEKIHTISIDSQVLCITHLPQVAAMADHHLLIEKIASQQETYTRVKQLTEQERIEELARMTTGTSLTDTSVS
YAKELISSAKQFKITQ

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=53819 AXY_RS06100 WP_015009918.1 1223431..1225161(+) (recN) [Amphibacillus xylanus NBRC 15112]
TTGTTAAGTGAACTTTCAATTCAAAATTTTACGATCATTAATCAATTAACCATTTCGTTTAACGACGGATTAACAGTTCT
TACAGGTGAAACCGGAGCTGGTAAATCAATTATTATTGATGCTATTGAACTTCTTACAGGCGGAAGAGGATCAGTTGAAT
ATGTTCGACATGGGAAGAATAAGGCTGTATTAGAAGGCTTATTTACAATTGACAATCCGAAACATGCCATTTATAAACTT
TTCGATAAATATGGTATTGAATATGATCAAGAAGGTATGATCATTCTTCACCGTACAATTAGTGCAAAAGGTAAAAGTAT
CTGTCGCGTTAATGGTTCATTAGTAACCTTAGCTATTTTGCGTGAGTTTGGCCAGACCTTAATTGATATTCATTCACAAC
ACGAAACACAATCGTTATTAGATTCTAGTCGACATCTTAGTTTGTTGGATATGTTTAATCAAGAACATGAAAACGATCGA
TTCAATGATTATCAGAGAGTATATAACAAATTAAAAAAGGCAAAGGTTGTTTACGATTCATTAAAGAACAACGAGCAAGA
GTCAATTCAGCGTCTTGATTTACTACGGTTTCAATTAAATGAGATTACTCAAGCCGAGCTCTCAGTAAATGAGGATATCG
AATTAAGACAAGAACGTGAGAAATTAGTTAATTTTGAACAAATTTATGAAAATGTAACTGAAGCGTATAATTCATTAAGA
GGAGAACATAAAGGATTAGATTGGCTATCAATGGGCTCAGCAGCATTAGAAACAGCTAGCAGTCTTGAGCCAGAGCTTGA
AAAGTTAAGTGAATCCTATTCAAATCAATATTATATGCTTGAAGAAATTAGCATTCAACTACGGAATTACTTAGATCAAA
TGTCTTATGAACCAGAGCGCCTAGCTGAAATTGAATCAAGATTAAATGAAATTCAGTTGCTGATCAGAAAATATGGATCA
AATGTTAATGAAATTATCGAATACGCCGCAGAAATTGAAGATGAAATTGAAACGTTAGAAAATCGAGATCAATCATTACA
GGAAATGGCTGATGAAATTAATGAATTATCTGAGGATGCATTGATAGAAGCTAAGCAACTCCATGATCGCAGAGTACAAG
GCGCAAAACGCTTAATTGATGTAATAAAAGCGGAATTAATAGATCTTTATATGGAGAAAACACAGTTTGAAACTGAGATT
GAAATTCGTGCAGGAAAGCCAGGAGATCCAGAGTTATCAGGAAAACCAGTCCATTTAGGTGAAAATGGCTTTGATCAAGT
TCGATTTTTACTTTCCACAAATCCAGGTGAACCTGTGAAACCATTAGATAAGGTGGCTTCAGGAGGAGAACTATCTAGGA
TAATGTTGGCGTTTAAAAAGGTATTTGCAAAACATCAAGGAGTTACAAGTGTTATATTTGATGAGGTTGATACTGGTGTA
AGTGGTCGTGTCGCTCAAGCGATTGCGGAAAAGATACATACGATTTCAATTGACTCTCAAGTGTTATGCATTACTCACTT
ACCACAAGTTGCAGCTATGGCAGATCATCATTTATTGATCGAAAAAATAGCATCACAACAAGAGACATATACGCGTGTTA
AACAGCTAACTGAACAGGAAAGAATTGAAGAATTAGCAAGAATGACAACTGGAACATCGTTAACTGATACATCAGTTAGC
TATGCCAAAGAGTTAATCAGTAGTGCTAAACAATTTAAAATAACTCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.899

100

0.54

Multiple sequence alignment