Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   LJA35_RS09290 Genome accession   NZ_CP085300
Coordinates   2135396..2136175 (+) Length   259 a.a.
NCBI ID   WP_061442172.1    Uniprot ID   A0ABW8BKT2
Organism   Streptomyces sp. BSE6.1     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2130396..2141175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA35_RS09275 - 2130645..2131178 (+) 534 WP_102931386.1 TerD family protein -
  LJA35_RS09280 - 2131255..2134152 (-) 2898 WP_102931387.1 vitamin B12-dependent ribonucleotide reductase -
  LJA35_RS09285 nrdR 2134318..2134866 (-) 549 WP_125628514.1 transcriptional regulator NrdR -
  LJA35_RS09290 dinR/lexA 2135396..2136175 (+) 780 WP_061442172.1 transcriptional repressor LexA Regulator
  LJA35_RS09295 - 2136264..2138282 (-) 2019 WP_102931389.1 ATP-dependent DNA helicase -
  LJA35_RS09300 - 2138449..2139141 (-) 693 WP_212731394.1 GNAT family N-acetyltransferase -
  LJA35_RS09305 - 2139205..2140962 (-) 1758 WP_233645516.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27972.69 Da        Isoelectric Point: 7.0666

>NTDB_id=538181 LJA35_RS09290 WP_061442172.1 2135396..2136175(+) (dinR/lexA) [Streptomyces sp. BSE6.1]
MTTTADSATITAQERPQGRPEPVHAMSDATNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=538181 LJA35_RS09290 WP_061442172.1 2135396..2136175(+) (dinR/lexA) [Streptomyces sp. BSE6.1]
GTGACCACCACCGCCGACAGTGCCACCATCACTGCCCAGGAACGCCCCCAGGGCCGACCTGAGCCGGTGCACGCGATGAG
CGACGCCACGAATCCCGAGGGGCACAAGCGCTCCCTGCCGGGGCGACCTCCCGGCATCCGGGCGGACAGCTCGGGACTCA
CCGACCGCCAACGCCGGGTGATCGAGGTCATCCGCGACTCCGTGCAGCGGCGCGGGTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCCGTCGGCCTCTCCAGCACCTCCTCCGTGGCACACCAGCTGATGGCTCTGGAGCGCAAGGGCTTCCTGCGCCG
GGACCCGCACCGCCCGCGCGCCTACGAGGTGCGTGGCTCCGACCAGGCCGCCTCGGTGCAGCCCACGGACACCGCCGGAA
AGCCGGCGGCGTCGTACGTGCCGCTCGTCGGGCGCATCGCCGCCGGTGGCCCGATCCTGGCCGAGGAGTCCGTCGAGGAC
GTCTTCCCGCTCCCCCGGCAGCTGGTCGGCGACGGTGAGCTGTTCGTGCTGAAGGTCGTCGGCGACTCGATGATCGAGGC
CGCGATCTGCGACGGGGACTGGGTCACGGTCCGCCGTCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAATGCGGCCTACGAGCCG
ATCCCCGGTGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTACTGCGTCGCGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375