Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K17_RS10205 Genome accession   NZ_CP070071
Coordinates   1906810..1907439 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FDAARGOS_1287     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1901810..1912439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K17_RS10190 (I6K17_10190) helD 1902052..1904106 (-) 2055 WP_001317751.1 DNA helicase IV -
  I6K17_RS10195 (I6K17_10195) yccF 1904229..1904675 (+) 447 WP_001261236.1 YccF domain-containing protein -
  I6K17_RS10200 (I6K17_10200) yccS 1904685..1906847 (+) 2163 WP_000875041.1 YccS family putative transporter -
  I6K17_RS10205 (I6K17_10205) sxy/tfoX 1906810..1907439 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6K17_RS10210 (I6K17_10210) sulA 1907658..1908167 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  I6K17_RS10215 (I6K17_10215) ompA 1908524..1909564 (+) 1041 WP_001314606.1 porin OmpA -
  I6K17_RS10220 (I6K17_10220) matP 1909640..1910092 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I6K17_RS10225 (I6K17_10225) ycbZ 1910278..1912038 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=538170 I6K17_RS10205 WP_000839153.1 1906810..1907439(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1287]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=538170 I6K17_RS10205 WP_000839153.1 1906810..1907439(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1287]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1