Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AXY_RS04120 Genome accession   NC_018704
Coordinates   831537..832487 (+) Length   316 a.a.
NCBI ID   WP_015009525.1    Uniprot ID   K0IWQ1
Organism   Amphibacillus xylanus NBRC 15112     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 826537..837487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXY_RS04115 (AXY_07870) addA 827556..831272 (+) 3717 WP_015009524.1 helicase-exonuclease AddAB subunit AddA -
  AXY_RS04120 (AXY_07880) ceuB 831537..832487 (+) 951 WP_015009525.1 ABC transporter permease Machinery gene
  AXY_RS04125 (AXY_07890) - 832480..833427 (+) 948 WP_015009526.1 iron chelate uptake ABC transporter family permease subunit -
  AXY_RS04130 (AXY_07900) - 833421..834179 (+) 759 WP_015009527.1 ABC transporter ATP-binding protein -
  AXY_RS04135 (AXY_07910) - 834234..835175 (+) 942 WP_015009528.1 siderophore ABC transporter substrate-binding protein -
  AXY_RS04140 (AXY_07920) - 835331..835795 (+) 465 WP_015009529.1 chemotaxis protein CheX -
  AXY_RS04145 (AXY_07930) - 835923..836468 (+) 546 WP_015009530.1 chemotaxis protein CheW -
  AXY_RS04150 (AXY_07940) - 836494..836850 (+) 357 WP_015009531.1 response regulator -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35095.39 Da        Isoelectric Point: 10.0322

>NTDB_id=53812 AXY_RS04120 WP_015009525.1 831537..832487(+) (ceuB) [Amphibacillus xylanus NBRC 15112]
MKYKYLIPILIVLSGLSIFIGVVPLKITDIFQLTDQQMQIIMISRLPRLISIIIAGVGLSISGLIMQQLSRNKFVSPTTA
GTMDSARFGILVAMLMFSNATPMQRVIVAFVFSLAGTFIFMKILDKIKFKDPVFIPLVGLMFGSIISSITTFFAYQHDLI
QNISAWLQGNFALMMQGRYELLYLSIPLVIIAYFFANRFTIAGLGEDFAKNLGLNYRFVVNCGLTIVALISAIVILTVGT
IPFLGLIVPNIVSIYRGDHLKTNLPYTALLGAIFLLFSDILGRVIIFPYEIAIGVVVGVLGSFIFLYLIMRRNAYD

Nucleotide


Download         Length: 951 bp        

>NTDB_id=53812 AXY_RS04120 WP_015009525.1 831537..832487(+) (ceuB) [Amphibacillus xylanus NBRC 15112]
ATGAAATATAAATATTTAATTCCAATTTTGATAGTCTTATCAGGTCTATCAATCTTTATTGGAGTGGTACCTTTAAAAAT
CACTGATATCTTTCAGCTAACGGACCAACAAATGCAAATTATTATGATCAGTCGTCTACCAAGATTAATCAGCATCATCA
TTGCCGGAGTAGGCTTAAGTATCTCAGGATTAATCATGCAGCAGCTTAGTCGAAATAAATTTGTTTCACCTACAACTGCA
GGGACTATGGACTCAGCTCGTTTTGGGATTTTAGTTGCAATGTTAATGTTTAGCAATGCAACACCGATGCAACGTGTAAT
TGTTGCATTTGTATTCTCATTAGCTGGGACTTTTATTTTCATGAAAATCCTCGATAAAATTAAATTCAAAGACCCAGTAT
TTATTCCTTTAGTTGGCTTAATGTTTGGAAGTATTATTAGTTCAATTACAACATTTTTTGCTTACCAGCATGATTTAATA
CAAAATATATCTGCCTGGCTACAAGGTAACTTTGCATTAATGATGCAAGGAAGATACGAATTACTTTATTTAAGTATCCC
ATTAGTGATCATTGCGTACTTTTTTGCTAACCGATTTACGATTGCCGGTTTAGGTGAGGATTTTGCGAAAAACCTCGGTC
TAAATTATCGATTCGTAGTCAATTGTGGGTTAACGATTGTTGCTTTAATTTCGGCAATTGTGATTTTAACGGTTGGAACA
ATCCCATTCCTCGGTTTAATCGTACCGAATATTGTTTCGATTTATCGTGGCGATCATTTGAAAACTAATTTACCTTATAC
TGCTTTACTAGGAGCTATTTTCTTATTGTTTAGTGACATATTGGGTAGAGTGATTATTTTCCCTTATGAAATAGCAATTG
GCGTTGTTGTCGGGGTACTTGGGAGCTTTATCTTCCTATATCTCATCATGAGGAGAAATGCATATGACTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0IWQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.921

99.684

0.547

Multiple sequence alignment