Detailed information NTG0538107

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LJA36_RS11515
• Genome accession: NZ_CP085282
• Coordinates: 2425276..2426406 (+)
• Length: 376 a.a.
• NCBI ID: WP_033574399.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain TPS17
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2420276..2431406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJA36_RS11490	-	2421234..2421920 (+)	687	WP_015418411.1	VWA domain-containing protein	-
LJA36_RS11495	-	2422229..2422909 (+)	681	WP_033574397.1	VWA domain-containing protein	-
LJA36_RS11500	-	2422995..2423159 (+)	165	WP_007407587.1	hypothetical protein	-
LJA36_RS11505	fdhD	2423254..2424042 (+)	789	WP_033574398.1	formate dehydrogenase accessory sulfurtransferase FdhD	-
LJA36_RS11510	moaA	2424060..2425085 (+)	1026	WP_062623579.1	GTP 3',8-cyclase MoaA	-
LJA36_RS11515	rapC	2425276..2426406 (+)	1131	WP_033574399.1	tetratricopeptide repeat protein	Regulator
LJA36_RS11520	-	2426527..2427006 (+)	480	WP_025285407.1	hypothetical protein	-
LJA36_RS11525	-	2427080..2427268 (+)	189	WP_015418407.1	CsbD family protein	-
LJA36_RS11530	ureA	2427622..2427939 (+)	318	WP_007407581.1	urease subunit gamma	-
LJA36_RS11535	ureB	2427936..2428310 (+)	375	WP_012118652.1	urease subunit beta	-
LJA36_RS11540	ureC	2428307..2430016 (+)	1710	WP_007407580.1	urease subunit alpha	-
LJA36_RS11545	-	2430157..2430561 (+)	405	WP_003151203.1	Rrf2 family transcriptional regulator	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44934.07 Da
• Isoelectric Point: 5.4431

>NTDB_id=538107 LJA36_RS11515 WP_033574399.1 2425276..2426406(+) (rapC) [Bacillus amyloliquefaciens strain TPS17]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIKRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide

• Length: 1131 bp

>NTDB_id=538107 LJA36_RS11515 WP_033574399.1 2425276..2426406(+) (rapC) [Bacillus amyloliquefaciens strain TPS17]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATAAAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACAGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTACGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAAGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ATCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCGCTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (192-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	42.105	100	0.426
rapF	Bacillus subtilis subsp. subtilis str. 168	40	99.734	0.399