Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LJA36_RS09830 Genome accession   NZ_CP085282
Coordinates   2082185..2082979 (+) Length   264 a.a.
NCBI ID   WP_007407895.1    Uniprot ID   A7ZAN9
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2077185..2087979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS09810 walR 2077447..2078154 (+) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -
  LJA36_RS09815 walK 2078161..2079996 (+) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  LJA36_RS09820 yycH 2079986..2081344 (+) 1359 WP_015418614.1 two-component system activity regulator YycH -
  LJA36_RS09825 yycI 2081331..2082170 (+) 840 WP_040238684.1 two-component system regulatory protein YycI -
  LJA36_RS09830 vicX 2082185..2082979 (+) 795 WP_007407895.1 MBL fold metallo-hydrolase Regulator
  LJA36_RS09835 htrA 2083066..2084262 (+) 1197 WP_007614967.1 S1C family serine protease Regulator
  LJA36_RS09840 - 2084752..2084961 (+) 210 WP_015418611.1 winged helix-turn-helix domain-containing protein -
  LJA36_RS09845 - 2084958..2086376 (+) 1419 WP_039253191.1 HAMP domain-containing sensor histidine kinase -
  LJA36_RS09850 - 2086608..2087615 (+) 1008 WP_031379194.1 ThiF family adenylyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29116.20 Da        Isoelectric Point: 6.0280

>NTDB_id=538098 LJA36_RS09830 WP_007407895.1 2082185..2082979(+) (vicX) [Bacillus amyloliquefaciens strain TPS17]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEKIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=538098 LJA36_RS09830 WP_007407895.1 2082185..2082979(+) (vicX) [Bacillus amyloliquefaciens strain TPS17]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAAAATCGGCCGCAAGATAGACGACGTGGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGACTTCCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCCCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGATGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCCAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCACATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZAN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527