Detailed information NTG0538093

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: I6K69_RS05770
• Genome accession: NZ_CP070062
• Coordinates: 1165645..1167003 (-)
• Length: 452 a.a.
• NCBI ID: WP_022220515.1
• Uniprot ID: A0A1C5YH15
• Organism: Coprococcus comes strain FDAARGOS_1339
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1160645..1172003

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K69_RS05770 (I6K69_05770)	radA	1165645..1167003 (-)	1359	WP_022220515.1	DNA repair protein RadA	Machinery gene
I6K69_RS05775 (I6K69_05775)	-	1167161..1167571 (-)	411	WP_008368562.1	hypothetical protein	-
I6K69_RS05780 (I6K69_05780)	-	1167673..1170120 (-)	2448	WP_008368564.1	ATP-dependent Clp protease ATP-binding subunit	-
I6K69_RS05785 (I6K69_05785)	-	1170146..1170520 (-)	375	WP_008368566.1	GntR family transcriptional regulator	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49677.40 Da
• Isoelectric Point: 6.2766

>NTDB_id=538093 I6K69_RS05770 WP_022220515.1 1165645..1167003(-) (radA) [Coprococcus comes strain FDAARGOS_1339]
MAKAKKSVFFCQNCGHEESKWLGQCPMCKEWNSFVEECVTTSNTAAVKAAKEIRIVPLSEVKTENEERVTTEIKELDRVL
GGGIVPGSLILVGGDPGIGKSTLLLQVCQKLAKKERKVLYISGEESLRQIKLRAQRMGEFNEHLLLLCETNLELIRNVIE
KEKPDTVIIDSIQTMYSEEVGSAPGSVSQVREATNTLMQLAKGLGISIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGDR
HASYRILRGVKNRFGSTNEIGVFEMRRDGLREVENPSEFMLNGRPENASGSVVACSMEGTRPILLEIQALVCESNFGMPR
RTAAGTDYNRVNLLMAVLEKRIGYHLGNYDAYVNIAGGIKINEPAIDLGIVMAIVSSYKNRPFDERTIVFGEVGLSGEVR
AVNMPEQRVAEAKKLGFETCIVPEVSLDSVKSIGGIKIIGVKSINEAIGLIE

Nucleotide

• Length: 1359 bp

>NTDB_id=538093 I6K69_RS05770 WP_022220515.1 1165645..1167003(-) (radA) [Coprococcus comes strain FDAARGOS_1339]
ATGGCGAAGGCAAAAAAGTCGGTTTTTTTCTGCCAGAATTGTGGACATGAAGAATCAAAATGGCTGGGGCAGTGCCCAAT
GTGCAAGGAATGGAACTCTTTCGTGGAAGAGTGTGTGACAACGTCGAATACGGCAGCAGTTAAAGCGGCAAAAGAGATTC
GTATTGTACCATTGTCAGAAGTAAAGACAGAGAATGAAGAGCGGGTGACAACCGAGATTAAAGAACTGGATCGTGTACTG
GGAGGCGGAATCGTACCGGGTTCCCTGATTCTGGTAGGCGGTGATCCGGGAATCGGTAAGTCAACGCTGCTCCTGCAGGT
GTGTCAGAAACTGGCAAAAAAAGAACGAAAGGTTTTGTACATATCAGGGGAAGAATCGCTTCGCCAGATTAAATTGCGTG
CACAGAGGATGGGAGAATTTAATGAACATCTGCTTTTGCTTTGTGAGACTAATCTGGAACTGATTCGCAATGTGATTGAA
AAGGAAAAACCAGATACCGTGATCATTGATTCGATTCAGACAATGTACAGTGAAGAAGTCGGTTCCGCACCTGGAAGTGT
GTCGCAGGTCAGAGAGGCAACAAATACGCTGATGCAGCTTGCAAAAGGGCTTGGGATTTCGATTTTTATTGTCGGACATG
TTACAAAAGAAGGAACTGTCGCCGGTCCAAGAGTATTGGAACATATGGTAGATACGGTTCTGTATTTTGAAGGAGACAGG
CATGCATCTTACCGGATTCTTCGAGGAGTGAAAAATCGTTTTGGTTCGACGAATGAGATTGGTGTATTTGAAATGCGAAG
AGATGGTCTTCGGGAGGTGGAAAATCCATCAGAATTTATGCTGAATGGGCGCCCGGAAAATGCATCTGGATCTGTTGTGG
CATGTTCTATGGAAGGAACACGTCCGATCTTGCTGGAAATCCAGGCGCTGGTATGCGAAAGCAATTTTGGAATGCCAAGA
AGAACAGCAGCAGGAACAGATTACAACAGGGTGAACCTTCTGATGGCGGTTTTGGAAAAAAGGATTGGATATCATCTTGG
AAATTATGATGCCTATGTGAATATTGCCGGAGGTATCAAGATCAATGAACCTGCGATAGACCTTGGAATCGTGATGGCGA
TCGTATCAAGCTATAAGAACAGACCATTTGATGAACGGACGATTGTGTTTGGAGAAGTTGGATTAAGTGGAGAAGTCCGG
GCGGTAAATATGCCGGAACAGCGGGTGGCAGAGGCGAAGAAGCTTGGATTTGAGACGTGTATTGTGCCAGAAGTATCTCT
GGATAGCGTGAAGAGTATTGGTGGGATCAAAATCATTGGAGTGAAAAGCATTAACGAGGCAATCGGACTGATTGAGTAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

• AAA domain (AAA_25) (61-218)

• Subunit ChlI of Mg-chelatase (ChlI) (342-424)

3D structure

• AlphaFold DB: A0A1C5YH15

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	56.512	100	0.566
radA	Streptococcus mitis NCTC 12261	55.778	99.558	0.555
radA	Streptococcus mitis SK321	55.778	99.558	0.555
radA	Streptococcus pneumoniae Rx1	55.778	99.558	0.555
radA	Streptococcus pneumoniae D39	55.778	99.558	0.555
radA	Streptococcus pneumoniae R6	55.778	99.558	0.555
radA	Streptococcus pneumoniae TIGR4	55.778	99.558	0.555