Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   LJA36_RS09120 Genome accession   NZ_CP085282
Coordinates   1953896..1954126 (-) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1948896..1959126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS09110 spoVT 1949620..1950156 (-) 537 WP_004264646.1 stage V sporulation protein T -
  LJA36_RS09115 mfd 1950293..1953826 (-) 3534 WP_033575247.1 transcription-repair coupling factor -
  LJA36_RS09120 subA/fin 1953896..1954126 (-) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  LJA36_RS09125 pth 1954188..1954754 (-) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  LJA36_RS09130 - 1954839..1955447 (-) 609 WP_033575248.1 50S ribosomal protein L25/general stress protein Ctc -
  LJA36_RS09135 - 1955532..1956485 (-) 954 WP_007409928.1 ribose-phosphate diphosphokinase -
  LJA36_RS09140 glmU 1956507..1957877 (-) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  LJA36_RS09145 spoVG 1958069..1958362 (-) 294 WP_004264660.1 septation regulator SpoVG -
  LJA36_RS09150 ridA 1958558..1958938 (-) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=538090 LJA36_RS09120 WP_004264650.1 1953896..1954126(-) (subA/fin) [Bacillus amyloliquefaciens strain TPS17]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=538090 LJA36_RS09120 WP_004264650.1 1953896..1954126(-) (subA/fin) [Bacillus amyloliquefaciens strain TPS17]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAGCGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868