Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   LJA36_RS07900 Genome accession   NZ_CP085282
Coordinates   1703014..1704135 (-) Length   373 a.a.
NCBI ID   WP_033575143.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1698014..1709135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS07880 - 1698462..1699157 (-) 696 WP_003156655.1 metal ABC transporter ATP-binding protein -
  LJA36_RS07885 - 1699212..1700171 (-) 960 WP_031378693.1 metal ABC transporter substrate-binding protein -
  LJA36_RS07890 - 1700356..1702035 (-) 1680 WP_039252865.1 alpha-glucosidase -
  LJA36_RS07895 - 1702119..1702898 (-) 780 WP_039252868.1 glucose 1-dehydrogenase -
  LJA36_RS07900 rapF 1703014..1704135 (-) 1122 WP_033575143.1 tetratricopeptide repeat protein Regulator
  LJA36_RS07905 - 1704245..1704748 (+) 504 WP_015416743.1 M15 family metallopeptidase -
  LJA36_RS07910 - 1704745..1706103 (-) 1359 WP_015416742.1 YcdB/YcdC domain-containing protein -
  LJA36_RS07915 - 1706304..1707704 (-) 1401 WP_039252871.1 YcdB/YcdC domain-containing protein -
  LJA36_RS07920 - 1707831..1708826 (+) 996 WP_015416740.1 DUF5105 domain-containing protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 44333.49 Da        Isoelectric Point: 5.0032

>NTDB_id=538084 LJA36_RS07900 WP_033575143.1 1703014..1704135(-) (rapF) [Bacillus amyloliquefaciens strain TPS17]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=538084 LJA36_RS07900 WP_033575143.1 1703014..1704135(-) (rapF) [Bacillus amyloliquefaciens strain TPS17]
ATGAAATCCAAAATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCCCTGGAATACCTCGAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAAGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(187-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

42.588

99.464

0.424
  rapC Bacillus subtilis subsp. subtilis str. 168

40.323

99.732

0.402