Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   I6K91_RS07860 Genome accession   NZ_CP070057
Coordinates   1687450..1688799 (+) Length   449 a.a.
NCBI ID   WP_204973871.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain FDAARGOS_1361     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 1680599..1690449 1687450..1688799 within 0


Gene organization within MGE regions


Location: 1680599..1690449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K91_RS07830 (I6K91_07835) - 1680599..1681096 (-) 498 WP_000051479.1 hypothetical protein -
  I6K91_RS07835 (I6K91_07840) - 1681565..1681942 (-) 378 WP_000687965.1 hypothetical protein -
  I6K91_RS07840 (I6K91_07845) - 1682368..1683300 (-) 933 WP_000364405.1 hypothetical protein -
  I6K91_RS07845 (I6K91_07850) - 1683372..1684955 (-) 1584 WP_001551935.1 hypothetical protein -
  I6K91_RS07850 (I6K91_07855) - 1685127..1685423 (+) 297 WP_000221967.1 single-stranded DNA-binding protein -
  I6K91_RS07855 (I6K91_07860) - 1685423..1687216 (+) 1794 WP_020368078.1 DUF927 domain-containing protein -
  I6K91_RS07860 (I6K91_07865) ccrA 1687450..1688799 (+) 1350 WP_204973871.1 recombinase family protein Machinery gene
  I6K91_RS07865 (I6K91_07870) ccrB 1688821..1690449 (+) 1629 WP_002495147.1 recombinase family protein Machinery gene

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52519.26 Da        Isoelectric Point: 9.8772

>NTDB_id=538072 I6K91_RS07860 WP_204973871.1 1687450..1688799(+) (ccrA) [Staphylococcus epidermidis strain FDAARGOS_1361]
MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQITQLIQQGQCDILCCYRLNRLHRN
LKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIFISLAELESDNIGEQVKNGLQEKAKQGRLITTHAPFGYDYH
NGTFIINQNESPTVKAVFNYYIKGHGYKKIAQLLEEDDTFINRQPYQVRNIIMNPNYCGRVINQYGQFDNMFPSIVSANV
YEQAQRLRSQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHILRYYVCPKNLNASRFVCDFKGINAQTLEDKVLKV
CQDFYQDHHIYAKIKNAIDKRLKRQRNTETHHTLTQEKLIEKLAQGIIDAETFRKQMQSLHQQPQRITSISEHQIQHTIQ
NIIQKRFTLNILYPYIETIHIAKDKNLIGIYFKNEPLNIVNQTMQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=538072 I6K91_RS07860 WP_204973871.1 1687450..1688799(+) (ccrA) [Staphylococcus epidermidis strain FDAARGOS_1361]
ATGAAACAAGTTATAGGCTATTTACGTCAAAGTACGATGAAACAACAATCTCTTGCAGCACAGAAACAAGCTATCGAAGC
AATAGCCGAAAAACATCATATTCAACATATCAACTTTTATAGCGACAAACAATCAGGACGCAAAGATAATCGTAGTGGGT
ATCGACAAATAACACAATTAATTCAACAAGGACAATGTGACATATTATGCTGTTATCGTCTTAATAGGTTGCATCGTAAT
CTGAAAAATGCATTAAAACTCATCAAATTATGTCAAACTTACCATGTTCATATCTTAAGCGTACATGATGGTTATTTTGA
TATGGATCAAGCTTTCGACCGACTCAAGCTTAATATCTTCATCAGTTTAGCCGAACTTGAATCAGATAATATTGGAGAAC
AAGTCAAAAATGGCCTTCAAGAAAAAGCAAAGCAAGGTCGATTGATTACAACACATGCACCTTTTGGCTACGACTATCAC
AACGGAACATTCATCATCAATCAAAATGAATCACCAACGGTGAAGGCTGTATTCAATTATTACATTAAAGGCCATGGTTA
TAAGAAAATTGCACAGTTATTAGAAGAAGATGATACGTTCATCAATCGACAACCTTATCAAGTTCGTAATATTATCATGA
ACCCTAATTATTGTGGTCGTGTTATCAACCAATACGGTCAATTCGACAATATGTTCCCTTCTATTGTTTCAGCAAATGTA
TATGAACAAGCGCAGAGACTTCGATCGCAAAAACAAACCAAACAGACACCTTCAGATAATCAACTAAAACAAAAAATCAA
ATGCCCATGTTGTAATGCAACACTTACAAATATGACCATTAGAAAAAAGAATCATATATTACGTTACTACGTCTGTCCTA
AAAACTTGAATGCTTCACGCTTTGTCTGTGATTTCAAAGGCATCAATGCACAGACATTGGAAGATAAAGTATTAAAAGTG
TGCCAAGACTTTTATCAAGACCACCATATCTACGCAAAAATTAAAAATGCGATTGACAAACGCTTAAAAAGACAACGAAA
CACAGAAACACATCACACACTGACTCAAGAAAAACTAATAGAAAAGTTAGCCCAAGGCATCATCGATGCAGAAACGTTCA
GAAAACAAATGCAATCATTACATCAACAACCGCAACGCATCACATCCATCAGTGAGCATCAAATACAACACACCATTCAA
AATATTATTCAAAAACGTTTCACGTTAAACATATTGTACCCTTATATTGAAACCATTCACATTGCGAAAGATAAAAATCT
TATAGGAATCTATTTCAAAAATGAACCTCTCAATATCGTCAATCAAACCATGCAATCATCAATTGCATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Recombinase (Recombinase)

(169-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus N315

91.982

100

0.92
  ccrA Staphylococcus aureus COL

75.501

100

0.755