Detailed information NTG0538071

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LJA36_RS07120
• Genome accession: NZ_CP085282
• Coordinates: 1520317..1521447 (-)
• Length: 376 a.a.
• NCBI ID: WP_014304380.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain TPS17
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1515317..1526447

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJA36_RS07095	-	1516108..1517385 (+)	1278	WP_088005335.1	Nramp family divalent metal transporter	-
LJA36_RS07100	-	1517490..1517756 (+)	267	WP_015416855.1	hypothetical protein	-
LJA36_RS07105	-	1517982..1518560 (+)	579	WP_015416854.1	hypothetical protein	-
LJA36_RS07110	-	1518656..1519213 (+)	558	WP_033575058.1	hypothetical protein	-
LJA36_RS19750	-	1519227..1519406 (+)	180	WP_033575059.1	hypothetical protein	-
LJA36_RS07115	-	1519593..1519823 (+)	231	WP_033575060.1	hypothetical protein	-
LJA36_RS19670	-	1520183..1520317 (-)	135	WP_254922222.1	hypothetical protein	-
LJA36_RS07120	rapC	1520317..1521447 (-)	1131	WP_014304380.1	Rap family tetratricopeptide repeat protein	Regulator
LJA36_RS07125	-	1521584..1521787 (-)	204	WP_228767510.1	DUF2651 family protein	-
LJA36_RS07130	-	1521863..1522996 (-)	1134	WP_025853743.1	hypothetical protein	-
LJA36_RS07135	-	1523059..1523826 (-)	768	WP_079890911.1	septation ring formation regulator EzrA	-
LJA36_RS07140	-	1524243..1524506 (-)	264	Protein_1401	peptidoglycan-binding domain-containing protein	-
LJA36_RS19755	-	1524542..1524721 (-)	180	WP_347815667.1	LysM peptidoglycan-binding domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44712.10 Da
• Isoelectric Point: 5.2992

>NTDB_id=538071 LJA36_RS07120 WP_014304380.1 1520317..1521447(-) (rapC) [Bacillus amyloliquefaciens strain TPS17]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAISYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAI

Nucleotide

• Length: 1131 bp

>NTDB_id=538071 LJA36_RS07120 WP_014304380.1 1520317..1521447(-) (rapC) [Bacillus amyloliquefaciens strain TPS17]
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCTACAGTCGAC
GAACTGCTTGAAAAAATAGAAAAACCACAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTGTTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAAGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAACTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGCTTGG
ATGAGGAAAAAGTGAAAAGAATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGAGTGAGATCATTATATAT
GATGGCGAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAGGAATATTTGGCTAAATTAAAAATCATTAATTCATTGTACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

• MalT-like TPR region (TPR_MalT) (145-296)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.534	99.202	0.372