Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LJA36_RS05560 Genome accession   NZ_CP085282
Coordinates   1229018..1229734 (-) Length   238 a.a.
NCBI ID   WP_031378880.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1224018..1234734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS05545 - 1226286..1227425 (+) 1140 WP_033574977.1 YibE/F family protein -
  LJA36_RS05550 - 1227422..1228183 (+) 762 WP_031378882.1 YibE/F family protein -
  LJA36_RS05555 - 1228219..1228884 (-) 666 WP_031378881.1 NAD(P)H-dependent oxidoreductase -
  LJA36_RS05560 treR 1229018..1229734 (-) 717 WP_031378880.1 trehalose operon repressor Regulator
  LJA36_RS05565 treC 1229758..1231443 (-) 1686 WP_033574976.1 alpha,alpha-phosphotrehalase -
  LJA36_RS05570 treP 1231518..1232933 (-) 1416 WP_020955500.1 PTS system trehalose-specific EIIBC component -
  LJA36_RS05575 - 1233204..1233464 (+) 261 WP_014417185.1 spore germination protein -
  LJA36_RS05580 - 1233479..1233721 (+) 243 WP_003155595.1 spore germination protein -
  LJA36_RS05585 - 1233737..1234168 (+) 432 WP_033574975.1 Hsp20/alpha crystallin family protein -
  LJA36_RS05590 - 1234178..1234555 (-) 378 WP_007610033.1 DUF1992 domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27573.57 Da        Isoelectric Point: 6.9762

>NTDB_id=538067 LJA36_RS05560 WP_031378880.1 1229018..1229734(-) (treR) [Bacillus amyloliquefaciens strain TPS17]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTEVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPQLTKAICEDS
IYEYLEGELGLSISYAQKEIVMEPAGEEDRKYLDLGGFSHMAIVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=538067 LJA36_RS05560 WP_031378880.1 1229018..1229734(-) (treR) [Bacillus amyloliquefaciens strain TPS17]
ATGAAAGTGAATAAATATATCACAATCTATAAAGATATGGTGCGGCAGATTGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGTAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGCTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGGAGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCAATTGACGAAGGCGATTTGCGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCATGGAGCCGGCGGGGGA
GGAAGACCGGAAGTATTTGGATCTCGGCGGGTTCAGCCATATGGCGATCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTCCAATATACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424