Detailed information NTG0538043

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LJA36_RS03200
• Genome accession: NZ_CP085282
• Coordinates: 788761..789897 (-)
• Length: 378 a.a.
• NCBI ID: WP_087920760.1
• Uniprot ID: A7Z3N2
• Organism: Bacillus amyloliquefaciens strain TPS17
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 783761..794897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJA36_RS03160	-	784039..784218 (-)	180	WP_031378816.1	hypothetical protein	-
LJA36_RS03165	xre	784409..784747 (+)	339	WP_003154871.1	HTH-type transcriptional regulator Xre	-
LJA36_RS03170	-	784896..785486 (+)	591	WP_007610775.1	ImmA/IrrE family metallo-endopeptidase	-
LJA36_RS03175	-	785508..786344 (-)	837	WP_040238256.1	manganese catalase family protein	-
LJA36_RS03180	-	786415..787017 (-)	603	WP_015417281.1	poly-gamma-glutamate hydrolase family protein	-
LJA36_RS03185	-	787127..787504 (+)	378	WP_007610770.1	PH domain-containing protein	-
LJA36_RS03190	-	787541..788494 (-)	954	WP_015417280.1	N-acetylmuramoyl-L-alanine amidase	-
LJA36_RS03195	-	788637..788771 (-)	135	WP_003154881.1	PhrA family phosphatase inhibitor	-
LJA36_RS03200	rapC	788761..789897 (-)	1137	WP_087920760.1	Rap family tetratricopeptide repeat protein	Regulator
LJA36_RS03205	-	790103..790570 (+)	468	WP_015417279.1	DinB family protein	-
LJA36_RS03210	-	790715..791479 (+)	765	WP_007610763.1	sulfite exporter TauE/SafE family protein	-
LJA36_RS03215	-	791513..793006 (-)	1494	WP_033574555.1	altronate dehydratase family protein	-
LJA36_RS03220	-	793003..794448 (-)	1446	WP_033574554.1	tagaturonate reductase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 45073.28 Da
• Isoelectric Point: 4.9159

>NTDB_id=538043 LJA36_RS03200 WP_087920760.1 788761..789897(-) (rapC) [Bacillus amyloliquefaciens strain TPS17]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide

• Length: 1137 bp

>NTDB_id=538043 LJA36_RS03200 WP_087920760.1 788761..789897(-) (rapC) [Bacillus amyloliquefaciens strain TPS17]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTTCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATATTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAATACCGTCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTGAATCTGTTCCAATTTTTACATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGATGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (221-293)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-67)

3D structure

• AlphaFold DB: A7Z3N2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	99.471	0.442
rapF	Bacillus subtilis subsp. subtilis str. 168	42.48	100	0.426